Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03580 967 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 598 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 596 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 574 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 555 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 548 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 533 / 1e-176 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 520 / 2e-172 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 518 / 4e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 519 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004744 [exp] 643 / 0 AT3G03580 339 / 9e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 605 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 589 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 584 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 581 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 580 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 565 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 562 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 557 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 619 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 615 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 601 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 584 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 583 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 579 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 575 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 565 / 0 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 555 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 551 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007806 pacid=23143581 polypeptide=Lus10007806 locus=Lus10007806.g ID=Lus10007806.BGIv1.0 annot-version=v1.0 ATGAGCAAGCTGCCGGAGTGCTACAGTGGATTTGTGTATACCGCGCTCGCCAGAGCGATATCCACCGCAGCAACCCAGAAGCAGCTCCGGAGAATACATT CCCGTTTACTCACACTAGGCCTAGATAAATCCGTCTTCTTCTCCGGAAAGCTGACAAGCAAATACGGCCAGCTCAAGGACCCGGTCTCTTCGCTCAATGT ATTCCGACGAGCCTCACCAGCGACGGCAGGAAATGCGTACCAGTGGAATTCGGTCATCAGAGCGCTTACTCAGAACGGACTATCTTCAAAAGCTCTGGAG ATTTACTCAGGTATGCAGGAGGTTAACGTCCGGCCTGATAATTATACTTTTCCGTCGGTCATCAATGCTTGTGCAGCGTTAATGGATTTGGAAATGGGAA AGGCTGTTCATGATAGAGTTAAGGAAAGGGGGTTTGGGGAGGATTTGTATATAGGGAATGCGTTGGTTGATATGTATGCGAGGTTTGGTGATTTGGTGAA TGCACGGGAGGTGTTTGATAAAATGCCTCAGAGAGATCTTGTCTCGTGGAATAGTTTGATTTCGGGGTATAGTGCGAACGGGCATTGGGAGGAGGCGTTG GAGGGTTATACGGAATTTAGAATGGCGGGGTTGAAGCCGGATTGTTTTACTATTTCGAGTGTTTTGCCTGCGTGTGTTGGGTTGGTTGACGTTGAGGGGA AGGTGATCCATGGTCTGGTTGAGAAGACTGGGATGAAGGGCGATGTAATAGTGAACAATGGGCTACTTTCTATGTATTTTAAGTTCGATAACTTGATCGA TGCTCGAAGGGTCTTCGATGAGATGGTGATAAGGGATACCGTTAGTTGGAACATCTTGATTTGTGGATATTCTGAGCTGCAGAGGTTTGAAGAGTCGATT GATCTTTTTGTGCATATGGTTCATGTGTTTAGGCCGGACTTGTTGACAATCACAAGCGTTCTCCGTGCTTGTGGGTACCTGCAGGACTTGGAGTTCACGA AGTTTGTTCATACTTATATGAGGAATAATGCTATTGAATGTGATGTCAAGGCTAATAATATTCTCATTGATACATACGCGAAATGTGGTGATATCTTAGC ATCGAGGGATGTGTTTGACACAATGGGATGCAAGGATCCCGTCTCATGGAACTCTTTGATAAGTGCTTACATCCAGAATGGCAGTTACGACGAAGGGTTG AAAGTGTTTAAGACGATGGTGAAGGAATTGATGCCTGATTCTGTCACCTATGTAATGATCTTGTCCATCTCGGCTAAATCAGTAGACTTGGACTTAGGGA AGCATACCCACTGTGCTATTGTTAAATCAGGATTCGTCTCGGATCTGGTTGTTCAGAATGCATTACTTGATCTCTATGCGAAATGCTGGAGAATGGATGA TTCACTCGAGGCTTTCACATCGATGAGAGTTCGTAATGTTATATCGTGGAATACTATCATTACAGCATGTGGCCAAGCGGAAGACTCTAGCCTAGGGTTT AGGATGATAAACCAGATGGTTACCGAAGATATAATGCCCGATACAACGACTATGCTAGCGGTATTACCCATATGTTCTATGCTAGCTGCTAAAAGTCAAG GAAAAGAAGTCCACGCCTTTACTTTGAGGCTTGGATTTGACTCGGATATACCCATTGGAAATGCGCTGATAGAAATGTACTCCAAGTGTGGCAACATAAA TGACGCAGTTAAAGCTTTCTTCCATATGAAAGCGAAAGATGTCGTGACGTGGACTTCTTTAATCTCAGCATATGGGATGCACGGTGAAGGAAATAAAGCT TTGAGAGCTTTCGAGGAAATGAAAGCAGCTGGCGTCGCTCCAGATCGGATTGCATTTGTCACCATCATCTATGCTTGTAGCCATTCAGGTCTGGTAGATG AAGGTCTAGCTTGCTTTCACCAAATGAAGGAAGAGTACCAGATTGAGCCAAGGATGGAACATTATGCTTGTGTTGTCGATCTTCTGTCTCGATCAGGGCA GTTATCGAGAGCTGAACGGTTCATCAGTTCTATGCCGGTCAAGCCAGATTCAAGCATATGGGGAGCTTTACTTAGCGCCTGTGTAGCATGTCGAGAGACA AAAATTGCAGAACGGGTATCGCATCACATTATGCAGCTAGAGCTGGAGGATCCTGGCTATTATGTTCTAGCATCCAATGTCTTTGCTGCTTTAGGCAAGT GGGAACAAGTCAAAACAATACGCAAATCGATCAAAGCACGAGGGATGAAGAAGGAACCTGGGCGGAGTTGGATCGAAATTAGAAACAGGATGTTTGCATT TGGCTCTGCAGACAAGCTCTCCGAACATTATGAAGAGATCAGCAACGTCTTGGGCGAGCTCGATTGCTTGATGTCCAAGGAAGGGTATTCTGCCAATGTG CAAGATGCTTTGCATGATATTGAGGAGGATGAGAAGAGAGACTGGGTCTGTGGGCATAGCGAAAGGCTTGCTATAGCCTTTGGAGTGTTGAGAACTGACG CAGGGAGCCCGTTACGAGTAATGAAGAACCTTCGCGTTTGTAGGGATTGTCATGCATGGACCAAGTATGCATCAAAGGTTACGAAGAGAGAAATATTAGT TAGGGACGCTAACCGGTTTCATTTGTTCAGAGATGGTGAATGTAGTTGTGGAGACCATTGGTAG
AA sequence Show only first row Show all	>Lus10007806 pacid=23143581 polypeptide=Lus10007806 locus=Lus10007806.g ID=Lus10007806.BGIv1.0 annot-version=v1.0 MSKLPECYSGFVYTALARAISTAATQKQLRRIHSRLLTLGLDKSVFFSGKLTSKYGQLKDPVSSLNVFRRASPATAGNAYQWNSVIRALTQNGLSSKALE IYSGMQEVNVRPDNYTFPSVINACAALMDLEMGKAVHDRVKERGFGEDLYIGNALVDMYARFGDLVNAREVFDKMPQRDLVSWNSLISGYSANGHWEEAL EGYTEFRMAGLKPDCFTISSVLPACVGLVDVEGKVIHGLVEKTGMKGDVIVNNGLLSMYFKFDNLIDARRVFDEMVIRDTVSWNILICGYSELQRFEESI DLFVHMVHVFRPDLLTITSVLRACGYLQDLEFTKFVHTYMRNNAIECDVKANNILIDTYAKCGDILASRDVFDTMGCKDPVSWNSLISAYIQNGSYDEGL KVFKTMVKELMPDSVTYVMILSISAKSVDLDLGKHTHCAIVKSGFVSDLVVQNALLDLYAKCWRMDDSLEAFTSMRVRNVISWNTIITACGQAEDSSLGF RMINQMVTEDIMPDTTTMLAVLPICSMLAAKSQGKEVHAFTLRLGFDSDIPIGNALIEMYSKCGNINDAVKAFFHMKAKDVVTWTSLISAYGMHGEGNKA LRAFEEMKAAGVAPDRIAFVTIIYACSHSGLVDEGLACFHQMKEEYQIEPRMEHYACVVDLLSRSGQLSRAERFISSMPVKPDSSIWGALLSACVACRET KIAERVSHHIMQLELEDPGYYVLASNVFAALGKWEQVKTIRKSIKARGMKKEPGRSWIEIRNRMFAFGSADKLSEHYEEISNVLGELDCLMSKEGYSANV QDALHDIEEDEKRDWVCGHSERLAIAFGVLRTDAGSPLRVMKNLRVCRDCHAWTKYASKVTKREILVRDANRFHLFRDGECSCGDHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	0	1
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	2.2	0.8624
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	3.5	0.8073
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10003287 [exp]	3.5	0.8045
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	5.5	0.8332
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	7.5	0.7983
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	7.9	0.8282
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	9.2	0.7497
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	9.9	0.7893
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10005987 [exp]	10.2	0.8036
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	10.2	0.7715

Compare expression of checked genes

Lus10007806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.