Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16700 468 / 7e-164 PSD1 phosphatidylserine decarboxylase 1 (.1) AT4G25970 77 / 4e-15 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1) AT5G57190 59 / 4e-09 PSD2 phosphatidylserine decarboxylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015839 [exp] 65 / 1e-11 AT4G25970 381 / 4e-130 phosphatidylserine decarboxylase 3 (.1) Lus10009324 [exp] 61 / 1e-09 AT5G57190 891 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10010761 [exp] 52 / 5e-07 AT5G57190 838 / 0.0 phosphatidylserine decarboxylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078300 [exp] 536 / 0 AT4G16700 566 / 0.0 phosphatidylserine decarboxylase 1 (.1) Potri.003G061700 [exp] 60 / 2e-09 AT5G57190 956 / 0.0 phosphatidylserine decarboxylase 2 (.1) Potri.001G172400 [exp] 59 / 4e-09 AT4G25970 966 / 0.0 phosphatidylserine decarboxylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02666 [flax] [poplar] PS_Dcarbxylase Phosphatidylserine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10007807 pacid=23143590 polypeptide=Lus10007807 locus=Lus10007807.g ID=Lus10007807.BGIv1.0 annot-version=v1.0 ATGAAGTTCCGATTCTCTCACAGGCTCCCGTTCTTCCATCCTCGGCTCAACCAGCAACGTCTTCATCAGCGGCATTTCTTCACTTCTCTTCTCAAGAAGG TCCAGTCACCGCCGCCAGCTCGTGCTTCCTTCAGTAATGGCAGCGGTGGCGCGTCGCAAGGCAATATGTTCCTGGTACCTGGTGCAACTGCAGCTACCTT ACTAATGCTTGGTGCTCTACATGCGCGTCGGATGTACGATGACAAAAAGATGGAAGAAGCGCGAGAGAAAGGTTTTGAAATTGAGTTCCAACCTGATGCA AAAGAACTCCCTATCTGGTTGCGCCCATTCGTGTACAAAGCTTGGGCAAGAGCATTTCATTCAAATTTGGAAGAAATATCTCTGCCTCTTGAAGAGTATT CTTCTTTGCGGGAATTCTTTGTTCGCACATTGAAAGAAGGGTCCAGGCCTATCGACACTGATCCTCATAGTCTGGCCAGTCCTGTGGATGGTACGATTCT AAGATTTGGAGAGTTGAAAGGGCGAGGGGCAATGATTGAACAAGTCAAAGGGTTTTCCTATTCTGCGTCTTCTCTGCTTGGAGCTAGTTCTTTCATTCCT ATGGTGGCTGAAGGGGAAGGTAGTGACGGACAAAGTGATCATCATGATAACAGCCAGAACTCGCAATGGAGAGTTTCTTTGTCTTATCCGAAAATCAGGG ACACTGTGAGGGCAAGTCCAGGGAAAGGACTTTACTACTGTGTAATTTACTTGAGGCCTGGGGACTACCACCGCATACACTCACCTGTCGACTGGAATGT TCTTGTCCGCCGTCACTTTTCAGGCCGCCTCTATCCGGTAAATGAGCGTGCAGCAAGAACAATCCGGAATCTGTATGTCGAGAATGAAAGGGTAGTAGTT GAAGGCCAATGGAATCAGGGATTCATGGCCATGGCTGCAGTCGGTGCAACAAATGTCGGGTCGATTGAGCTTTTCATTGAACCGGAGCTTCGAACAAACC TGCCGAAAAAGCTGCCATCAGTGTCCGGGCCTCTGGAAGAACGGTTATACAAACCTGAAGGTGTCGGGAGGCTGGTCAAGAAAGGAGACGAGATTGCTGC TTTCAACTTGGGATCTACAGTAGTGCTTGTGTTCCAAGGTCCAACATTAAAATCATCCAAAGATGGAGACCATCCGTCATCAGAATTCAGGTTTAACATC AAACGCGGGGATCGGGTTCGAGTTGGAGAAGCACTTGGCAGATTTCATGATGCGTAG
AA sequence Show only first row Show all	>Lus10007807 pacid=23143590 polypeptide=Lus10007807 locus=Lus10007807.g ID=Lus10007807.BGIv1.0 annot-version=v1.0 MKFRFSHRLPFFHPRLNQQRLHQRHFFTSLLKKVQSPPPARASFSNGSGGASQGNMFLVPGATAATLLMLGALHARRMYDDKKMEEAREKGFEIEFQPDA KELPIWLRPFVYKAWARAFHSNLEEISLPLEEYSSLREFFVRTLKEGSRPIDTDPHSLASPVDGTILRFGELKGRGAMIEQVKGFSYSASSLLGASSFIP MVAEGEGSDGQSDHHDNSQNSQWRVSLSYPKIRDTVRASPGKGLYYCVIYLRPGDYHRIHSPVDWNVLVRRHFSGRLYPVNERAARTIRNLYVENERVVV EGQWNQGFMAMAAVGATNVGSIELFIEPELRTNLPKKLPSVSGPLEERLYKPEGVGRLVKKGDEIAAFNLGSTVVLVFQGPTLKSSKDGDHPSSEFRFNI KRGDRVRVGEALGRFHDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Lus10007807 [exp]	0	1
AT5G27410			D-aminoacid aminotransferase-l...		Lus10035342 [exp]	4.5	0.8080
AT5G06130			chaperone protein dnaJ-related...		Lus10016993 [exp]	9.8	0.7710
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10037247 [exp]	22.8	0.7921
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	32.9	0.8074
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Lus10035699 [exp]	34.3	0.7621
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	44.3	0.7670
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	44.5	0.7879
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	52.8	0.7915
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024296 [exp]	60.7	0.7532
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10037905 [exp]	64.8	0.7345

Compare expression of checked genes

Lus10007807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.