Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16760 993 / 0 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 971 / 0 ACX5 acyl-CoA oxidase 5 (.1) AT5G65110 280 / 4e-85 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 230 / 1e-66 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 216 / 1e-61 ACX6 acyl-CoA oxidase 6 (.1) AT3G51840 64 / 2e-10 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1) AT3G45300 45 / 0.0002 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004745 [exp] 1217 / 0 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 1125 / 0 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 1123 / 0 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10041711 [exp] 270 / 4e-81 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10039894 [exp] 223 / 4e-64 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10016249 [exp] 223 / 5e-64 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10024038 [exp] 205 / 1e-57 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10002177 [exp] 185 / 2e-51 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10027811 [exp] 69 / 6e-12 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079200 [exp] 1095 / 0 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 1092 / 0 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.007G090400 [exp] 277 / 5e-84 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 271 / 1e-81 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.013G123500 [exp] 226 / 5e-65 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 221 / 4e-63 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.016G118000 [exp] 68 / 7e-12 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 64 / 1e-10 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007815 pacid=23143560 polypeptide=Lus10007815 locus=Lus10007815.g ID=Lus10007815.BGIv1.0 annot-version=v1.0 ATGATGGGCAGGAAGGAGCTGTTCAAGAACACGCTGAGGAAGGCTGCGTATGCTTGGAAGAGGATAATTGAGCTCCGTCTTACTGAGGAAGAAGCGACTA AGTTGAGGTTCTACGTCGATGAACCTGCTTTCACTGATCTTCATTGGGGAATGTTTATACCAGCAATTAAAGGGCAAGGAACAGATGAACAGCAGCAGAA ATGGCTTCCTTTGGCTTATAAGATGCAAATAATTGGATGTTACGCACAGACTGAACTAGGCCATGGTTCTAATGTTCAAGGTCTTGAGACCACTGCTACA TTTGATCCCCAGACTGATGAATTCGTCATCCATAGTCCCACCTTGACTGCTAGCAAATGGTGGCCTGGTGGACTGGGCAAAGTGTCTACCCATGCTGTGG TTTATGCACGTCTGATTACCAACGGACAAGAAAATGGAGTCCATGGTTTTATCGTCCAGCTCCGTAGCTTAGATGATCACCTGCCTCTCCCGGGCATAAC AATTGGTGATATTGGTATGAAATTTGGGAATGGTGCGTATAACACCATGGACAATGGTGTTTTACGTTTTGAACATGTACGCATTCCAAGGGATCAAATG CTTCAGAGGGTGCTGCAAGTTACAAGGGAAGGGAAATGTGTCGAGTCAAATGTCCCTCGACAGCTGATTTATGGTACTATGGTTTATGTGCGTCAAACAA TTGTGGCTGATGCCTCTCATGCTTTATCACGGGCAGTTTGTGTAGCAACGAGATATAGTGCTGTTCGCAGGCAATTTGGTTCTCAAAATGGTCTTGAGAC ACAGGTGATTGATTATAAGACTCAACAAAGCAGACTGTTCCCTTTGCTGGCTTCTGCATATGCTTACAGATTTGTGGGCGAATGGTTAGAATGGCTGTAC AAGGATGTCACACAAAGACTTGCTGCAAAGGACTTCTCTACTTTGCCCGAGGCTCATGCTTGTACTGCTGGTTTGAAGTCCTTGACTACTTCTTTCACAG CTGACTCCATTGAAGAGTGTAGGAAATTGTGTGGTGGCCATGGTTACCTTTGCAGGAGTGGCCTCCCTGAGTTATTTGCGGTTTACGTTCCTGCCTGTAC ATATGAAGGAGACAACGTTGTCTTGCTCTTGCAGGTGGCAAGATTTCTGATGAAGACTGTTTCCCAGCTGCCTTCTGGAAAGAAGCCTCTTGGAACCACA TCTTACCTAGGACGTGCAGAACATCTTTTACAGTATCGTTGTAACGTTCAGAAGGCTGAGGACTGGCAAAACCCTGTTGTGATACTTGAGGTCTTCGAAG CCAGGGCCGCCAGGATGTGCGTAAACCGTGCTCAAAGGCTTGCCGGTTTCTCATCCCCTGAAGAGGGTTTCGCAGAACTTTCAGCTTTTCTGGCCGAGGC TGCTGTCGCTCATTGCCAGCTGATCGTTGTCTCCAAGTTCATCGAGAAGCTGCAGCAAGAAATACCAGGAAAAGGTGTGAAACAGCAGCTGCAGAACCTC TGCAACATTTACGCGTTGAACCTGGTCAACAGACACCTAGGAGATTTCCTCTCCACCGGCGCCATTTCCGCCAAGCAAGCTTCCTTAGCAAATGATCAGC TTAGATCATTATTCTCTCAGGTTCGTCCCAACGCAATTGCACTGGTGGACGCGTTCAACTACACCGACCACTACCTCGGTTCGATTTTGGGGCGCTACGA CGGAGACGTGTACCCGAAACTCTACGAAGAAGCGTGGAAGGATCCATTGAACGATTCAGTGGTGCCCGATGGCTACCATGAGTATGTCCGTCCAATGCTG AAACAGCAGCTTCGCAATGCCAGGCTCTGA
AA sequence Show only first row Show all	>Lus10007815 pacid=23143560 polypeptide=Lus10007815 locus=Lus10007815.g ID=Lus10007815.BGIv1.0 annot-version=v1.0 MMGRKELFKNTLRKAAYAWKRIIELRLTEEEATKLRFYVDEPAFTDLHWGMFIPAIKGQGTDEQQQKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTAT FDPQTDEFVIHSPTLTASKWWPGGLGKVSTHAVVYARLITNGQENGVHGFIVQLRSLDDHLPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRDQM LQRVLQVTREGKCVESNVPRQLIYGTMVYVRQTIVADASHALSRAVCVATRYSAVRRQFGSQNGLETQVIDYKTQQSRLFPLLASAYAYRFVGEWLEWLY KDVTQRLAAKDFSTLPEAHACTAGLKSLTTSFTADSIEECRKLCGGHGYLCRSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLPSGKKPLGTT SYLGRAEHLLQYRCNVQKAEDWQNPVVILEVFEARAARMCVNRAQRLAGFSSPEEGFAELSAFLAEAAVAHCQLIVVSKFIEKLQQEIPGKGVKQQLQNL CNIYALNLVNRHLGDFLSTGAISAKQASLANDQLRSLFSQVRPNAIALVDAFNYTDHYLGSILGRYDGDVYPKLYEEAWKDPLNDSVVPDGYHEYVRPML KQQLRNARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10007815 [exp]	0	1
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	5.1	0.7984
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10033387 [exp]	8.5	0.7872
AT3G21790			UDP-Glycosyltransferase superf...		Lus10036087 [exp]	8.8	0.7477
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	12.0	0.7668
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	15.8	0.7813
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	16.7	0.7622
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	17.5	0.7560
AT3G62260			Protein phosphatase 2C family ...		Lus10038058 [exp]	20.6	0.7897
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	22.2	0.7353
AT1G76600			unknown protein		Lus10012442 [exp]	22.9	0.7624

Compare expression of checked genes

Lus10007815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.