Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24620 56 / 6e-10 EF hand calcium-binding protein family (.1) AT4G14640 52 / 6e-09 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G59440 52 / 9e-09 Calcium-binding EF-hand family protein (.1) AT4G20780 52 / 1e-08 CML42 calmodulin like 42 (.1) AT5G37780 51 / 2e-08 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 51 / 2e-08 ACAM-4, CAM4 calmodulin 4 (.1.2) AT2G27030 50 / 2e-08 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT5G44460 51 / 3e-08 CML43 calmodulin like 43 (.1) AT5G21274 50 / 3e-08 ACAM-6, CAM6 calmodulin 6 (.1) AT1G18530 50 / 3e-08 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017174 [exp] 54 / 3e-09 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10004330 [exp] 53 / 4e-09 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10017900 [exp] 53 / 4e-09 AT3G25600 252 / 4e-87 Calcium-binding EF-hand family protein (.1) Lus10028913 [exp] 53 / 5e-09 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10019055 [exp] 52 / 6e-09 AT1G32250 93 / 9e-25 Calcium-binding EF-hand family protein (.1) Lus10021134 [exp] 53 / 1e-08 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10027701 [exp] 52 / 2e-08 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10041288 [exp] 50 / 4e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 50 / 4e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088500 [exp] 148 / 6e-46 AT1G24620 99 / 2e-26 EF hand calcium-binding protein family (.1) Potri.015G032600 [exp] 54 / 2e-09 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 54 / 2e-09 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.010G132800 [exp] 53 / 3e-09 AT3G25600 229 / 4e-78 Calcium-binding EF-hand family protein (.1) Potri.006G026700 [exp] 50 / 3e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 50 / 3e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.016G024700 [exp] 50 / 3e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.005G215700 [exp] 50 / 3e-08 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.001G222200 [exp] 50 / 5e-08 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.002G047300 [exp] 50 / 6e-08 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10007816 pacid=23143589 polypeptide=Lus10007816 locus=Lus10007816.g ID=Lus10007816.BGIv1.0 annot-version=v1.0 ATGGCAAGAGCCCAGCAGTTATCCTCAGGAACTGAGAGACTGAACCAAGTGGTAACACTGGTGGAGGCCTTCAAGGCCTTTGATTCCGACAACGACGGCT TCATCACGGCGGCAGAGCTCGGAGGGATCCTAGGCTCCCTCGGATACAACGCCGCCGGCGAGCAAGAGGTGAAGGCCATGATGCTGCAGGGTGACAAGGA CAAGGATGGGTTGCTTAGTGTTGGAGAGTTCCTGCAGATGAACACTAAGGACATGGAAGTTGCTGGGTGCGTTGGGAACTTGTTGAAGGCGGCCATGGAA GCCCTAGACGACGAGGAAGAAGATGAGACAACGCTCTTAACCGGAGAGGAGCTGTGGGAGTTCCTGGCCGACTCCGATGGAGCCTCCAGCCAACGACAAA TGTCGTTGGAGGACTGCCAGGCGATTGTGGCCGCCATGGATGTGGATGGAGATGGTGCAATTAGCGCTCATGACCTCAGGCTTATTGCCACTTCCCTTCT CTAA
AA sequence Show only first row Show all	>Lus10007816 pacid=23143589 polypeptide=Lus10007816 locus=Lus10007816.g ID=Lus10007816.BGIv1.0 annot-version=v1.0 MARAQQLSSGTERLNQVVTLVEAFKAFDSDNDGFITAAELGGILGSLGYNAAGEQEVKAMMLQGDKDKDGLLSVGEFLQMNTKDMEVAGCVGNLLKAAME ALDDEEEDETTLLTGEELWEFLADSDGASSQRQMSLEDCQAIVAAMDVDGDGAISAHDLRLIATSLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	0	1
					Lus10025225 [exp]	1.4	0.9530
AT1G60783			unknown protein		Lus10026693 [exp]	1.4	0.9468
					Lus10017954 [exp]	3.2	0.9363
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	4.0	0.9410
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	4.6	0.9466
					Lus10025141 [exp]	6.5	0.9350
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10028015 [exp]	6.6	0.9195
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10036758 [exp]	7.7	0.9114
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	7.9	0.9272
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	8.5	0.9247

Compare expression of checked genes

Lus10007816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.