Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05090 373 / 2e-127 Inositol monophosphatase family protein (.1) AT5G64000 101 / 9e-24 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G63980 98 / 3e-22 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G54390 93 / 1e-20 ATAHL, AHL HAL2-like (.1) AT5G63990 92 / 2e-20 Inositol monophosphatase family protein (.1.2) AT5G09290 81 / 1e-16 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006739 [exp] 356 / 1e-120 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1) Lus10018453 [exp] 102 / 1e-23 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10015663 [exp] 91 / 7e-20 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10038597 [exp] 89 / 3e-19 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10037888 [exp] 84 / 2e-17 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10037677 [exp] 79 / 5e-16 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10011231 [exp] 77 / 5e-15 AT5G54390 447 / 4e-156 HAL2-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033200 [exp] 412 / 2e-142 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.007G105100 [exp] 99 / 1e-22 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.011G124700 [exp] 98 / 2e-22 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.011G044900 [exp] 96 / 3e-21 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G036400 [exp] 95 / 4e-21 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.005G063900 [exp] 94 / 5e-21 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10007817 pacid=23143562 polypeptide=Lus10007817 locus=Lus10007817.g ID=Lus10007817.BGIv1.0 annot-version=v1.0 ATGAATCTCGTCAACACCACCGCTTTCAGCACTTCTCTTCGTCCCTCTTCCGGCGCCGGATTCTTCCGCCGCCGGTGCTATCGAACTATTGCTCCTCCTC TTACCGGACGAGTCTTCCTCGTAAGATCGAGCGTTCATCCGTTTCCAGCTCACGAGGCTAAGTACCACAGAGAGTTAGAAGCTGCCGTGGAGATTGTCGA GCGTGCTTGCCGCATTTGCGTCGACGTGCAATCTTCAGTCCGCTCCAGTGAAGGATCGTCTGTGGAGAAGAGTGACAGTACTCCAGTCACCATTGCAGAT TTCGGCGTTCAAGCCTTCATCAGTTACGAGCTAGATCAAGCTTTCCCTGCTATTCCCTTGGTTGCTGAAGAGGATTCTGGTTTCTTACGAGCAAATAACC TTGTGGATTCTGTTGCCAGAGTGATTGCTAATAGAACGAGTTCAGATAAGCCGTTGACTGAAGCTCAAGTTCTGGAGGCAATTGACAGAGGAGGAAAGAA TCCCATTGTTTACGACGATAAGCCAGCCACTTACTGGATACTGGACCCCATCGATGGCACCAGAGGGTTCCTCAGAGGAAGTGGTGCCTTATACGTGGTG GGGTTGGCTCTAGTGGTAGAAGGAGAGATCGTCTTGGGTGTAATGGGCTGTCCAAACTGGCAGGATTCGGAATCCTTCGAATCATCCATTAAAGGATCTA ACAACACATCAAGCCTATCCACCACAGTCATGATAATGGCTGCTCATGTTGGCTGCGGGACCTGGAAAAGGAGGTTTCAAGATGTTCAAACCATATCAGC AGGTAACCTATCCAACGATTGGAGTAGATGCTCCGTTGATGTACATTCCTCGATATCCGAAGCACGGTTTTGCATCACCGACAATGCAACATGGGACTCG CTGCCTCTGTCACCTTTCCTCGGTTCAAACGACGTCGTTCTCTTGCAGGCCTGTTGTGGCAGCTTATCCAGGTATATAATGGTGGCTTTAGGAATTGCAT CGGTGTTCATTCTTCGAGAAAAACCGCGGATATCTACCAAGGTGTGGGATCACGCTGTTGGGTTGATATGCGTTCATGAAGCTGGCGGCAAGGTGAGTGA CTGGAGAGGAACTGAACTTAACCTCGCAGAGGACAAAGTGGAGAGAAGGATCTTGTACCCAGCTGTAGGAGTTCTCGTCACCAATGGCAAGATCCATAAC CATATAGTCGAGCTGATTTCTGCAAGTCCCTGCCCTTGA
AA sequence Show only first row Show all	>Lus10007817 pacid=23143562 polypeptide=Lus10007817 locus=Lus10007817.g ID=Lus10007817.BGIv1.0 annot-version=v1.0 MNLVNTTAFSTSLRPSSGAGFFRRRCYRTIAPPLTGRVFLVRSSVHPFPAHEAKYHRELEAAVEIVERACRICVDVQSSVRSSEGSSVEKSDSTPVTIAD FGVQAFISYELDQAFPAIPLVAEEDSGFLRANNLVDSVARVIANRTSSDKPLTEAQVLEAIDRGGKNPIVYDDKPATYWILDPIDGTRGFLRGSGALYVV GLALVVEGEIVLGVMGCPNWQDSESFESSIKGSNNTSSLSTTVMIMAAHVGCGTWKRRFQDVQTISAGNLSNDWSRCSVDVHSSISEARFCITDNATWDS LPLSPFLGSNDVVLLQACCGSLSRYIMVALGIASVFILREKPRISTKVWDHAVGLICVHEAGGKVSDWRGTELNLAEDKVERRILYPAVGVLVTNGKIHN HIVELISASPCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	0	1
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	1.0	0.9347
					Lus10004199 [exp]	3.5	0.8809
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	3.7	0.9202
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	4.9	0.9131
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	5.7	0.9091
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031298 [exp]	7.4	0.8820
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	9.2	0.8897
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	9.2	0.8908
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	11.6	0.8916
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031299 [exp]	12.6	0.8858

Compare expression of checked genes

Lus10007817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.