Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03400 265 / 3e-86 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 252 / 4e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G03410 252 / 9e-81 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 249 / 3e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 249 / 7e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 249 / 8e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30830 248 / 8e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 240 / 2e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 234 / 3e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 232 / 3e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022189 [exp] 253 / 3e-81 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023499 [exp] 238 / 1e-75 AT1G06620 400 / 2e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 235 / 2e-74 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10033879 [exp] 234 / 6e-74 AT5G59540 312 / 8e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10027586 [exp] 233 / 1e-73 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 230 / 3e-72 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000612 [exp] 229 / 6e-72 AT5G59540 337 / 2e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10040380 [exp] 228 / 1e-71 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 227 / 4e-71 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107500 [exp] 438 / 2e-153 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 272 / 7e-89 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 253 / 2e-81 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 253 / 2e-81 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 252 / 7e-81 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 245 / 4e-78 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 242 / 3e-77 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 237 / 3e-75 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 236 / 7e-75 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 231 / 5e-73 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10007818 pacid=23143600 polypeptide=Lus10007818 locus=Lus10007818.g ID=Lus10007818.BGIv1.0 annot-version=v1.0 ATGGTGACTACGGCAACAGCAATCACCAGCCCCGCCGATGGAGACGTCTACGACCGGCAGAAGGAGGTAAGAGACTTCGACGAATCAAAGCTGGGCGTCA AGGGCCTTGTGGATACCGGAATTTCATCGATCCCTCGCTTCTTCATCCACAAGAACTTCAAACCTCCCGCCGCAGATACTAACGCCGGGGACGATGGTGT CGTCATCCCGACGATCGACCTATCCGGCATCGACCTCCCGGAGAGGAGAGCAAAGATCGTGGAGCAGATATCTGACGCGGCTCGCCAGCTCGGATTCTTC CAGGTCGTTAATCACGAGATCCCGGTGGAGACTCTGGACCGGTTTGTCGGCGCCGTGAGGGGATTCCATGAACTTCCGAAGGAAGAGAAGGCGAAGCTGT ATCATCGGGAGTTTGGGAGAGGCGTTTCGTTCTTCTCGAATATTGATCTGCTTCACTCTCTGGCTGCCAGCTGGAGGGACACACTTCAGATGAGGCTAGG CCCCAACTTACCGGACTTGGAGTCGATTCCTGAGATATGCCGGAACGAAGTGATCGAATGGAACGAATCTTCGAAAAGAGTCGCCGAATTACTGATGGAG CTCCTCTGCGAAGGACTAGGGTTGAATTCGAAAGCTCTGAAGGAGAAAAAGTTTCTTGAATCCAGAGTAATGGTGGGACACTATTACCCTTACTGTCCAC AGCCTGACTTAACGGTCGGAATCACTTCCCACACCGATCCAGGAGCCTTAACCTTGCTCCTCCAGGACCAAGTCGGTGGTCTCCAGGTCAAGTCCGGAGA GAACTGGGTCAATGTTGATCCCGTTCGTGGAGCTCTCGTCGTTAACATCGGAGACCTCCTGCAGATTATGTCGAATGACGAGTACAAGAGCGTGGAACAC AGGGTGCTGGCGAACCCATCCTCAGAGCCGAGAGTCTCTGTCGCGGTGTTCTTCAATTCTGACGAGGCTGAGGCGGTTTTGGGACCGTTCCCGGGGCTGA TATCGGACGAGAAGCCTGCTGTGTACCGGCAGTTTCCAAGATCAGACTACATGAGGAGGTTCTTCTCTAAAGAGTTGGATGGTAGAACTCTTACCAACTT CTACAAGGTGTAA
AA sequence Show only first row Show all	>Lus10007818 pacid=23143600 polypeptide=Lus10007818 locus=Lus10007818.g ID=Lus10007818.BGIv1.0 annot-version=v1.0 MVTTATAITSPADGDVYDRQKEVRDFDESKLGVKGLVDTGISSIPRFFIHKNFKPPAADTNAGDDGVVIPTIDLSGIDLPERRAKIVEQISDAARQLGFF QVVNHEIPVETLDRFVGAVRGFHELPKEEKAKLYHREFGRGVSFFSNIDLLHSLAASWRDTLQMRLGPNLPDLESIPEICRNEVIEWNESSKRVAELLME LLCEGLGLNSKALKEKKFLESRVMVGHYYPYCPQPDLTVGITSHTDPGALTLLLQDQVGGLQVKSGENWVNVDPVRGALVVNIGDLLQIMSNDEYKSVEH RVLANPSSEPRVSVAVFFNSDEAEAVLGPFPGLISDEKPAVYRQFPRSDYMRRFFSKELDGRTLTNFYKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	0	1
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10014948 [exp]	3.9	0.7981
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	4.2	0.7683
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	7.6	0.7970
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	7.9	0.7637
AT5G35460			unknown protein		Lus10017161 [exp]	12.1	0.7874
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10017470 [exp]	13.0	0.7441
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10015121 [exp]	13.3	0.7710
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	14.7	0.7591
AT5G25280			serine-rich protein-related (....		Lus10006660 [exp]	15.9	0.7109
AT5G04460			RING/U-box superfamily protein...		Lus10028827 [exp]	17.2	0.7368

Compare expression of checked genes

Lus10007818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.