Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59390 301 / 2e-102 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040180 [exp] 335 / 1e-115 AT3G59390 364 / 6e-128 unknown protein Lus10004383 [exp] 331 / 4e-114 AT3G59390 366 / 8e-129 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051300 [exp] 340 / 7e-118 AT3G59390 377 / 5e-133 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10218 [flax] [poplar] DUF2054 Uncharacterized conserved protein (DUF2054)
Representative CDS sequence Show only first row Show all	>Lus10007819 pacid=23143558 polypeptide=Lus10007819 locus=Lus10007819.g ID=Lus10007819.BGIv1.0 annot-version=v1.0 ATGCCTAATCTAGTATCCACATTACCCTGTTTCCTACTCCAATTAGTGATCCTCAATCTCCTCCCCAGAGTCTCCTCCATAAGGAAAGGCATCGGGTTCG GAGCGACCCCGATCTGTAGGCATACCGTTCAAGGACGATACTTGCTCTCCGATGACAAAGGCCATGTCTGTGAACCTCTGGCCATCGATCCAGAGTCGAG ATGCTGTCCGAAGAAAGGAGACAGGTATTCGTGTAAGGGATGTAGCCTTCTATCGAATTGCTGTGATTCGTACGAGTACTGCGTCTCCTGCTGCATGAAT CCGTCTACTACGAGCGAAGACGAGGCTACGAAGGTGAGCAATGTAGTCAAAATTGTGAATGCTATCGGCGTTAGCTATATCTTTCGTTATGTCGAGTGTA TCATGATTATCCGTCTGATCATGAACGTGAAAATCACGATTTTGACTGCATTGAAGGTTCGAATCGCCAAGACTTCGACTTCAACAAACTACTCAACCCT TTTCGACTACTGCGAGGGGAGGTGCAGGCACAACTCCGCGAGCGTGGTCCACGAAAACGCCTACATCAGCAACTTCCACCACTGCTTCTACCTGCCTTCC TCTGCCTTGGAAGACAACGCCACACGACCTGTGGTGCTAGAAGGAAGGCTAGCTGGGGTCAGTGTGGTGATCGGCCAACGAGGAGAGTCGTGCGACTCGA CTTGCGAGTCGAACGGGCAGTCGTGCGTGGTAAACAAGTTGTTGGTGCTCAACGAGTGCGACGTCATGAAAAAGTACTTGGGGTGTGAAGGTGGGTGTTT GGCTAGCATGGGGAGTGATCAGCCTGCTGAAGTTGTTGATGATGCTCCCAAGGAACTGAGTCCTGGAGCTTGCTTGTTTACCAAGGCACTGTCGATGATT TCGTGCGACGGTTGGCATAACAATACCCGCCGGGTCTGTCCGTGTGCGTAG
AA sequence Show only first row Show all	>Lus10007819 pacid=23143558 polypeptide=Lus10007819 locus=Lus10007819.g ID=Lus10007819.BGIv1.0 annot-version=v1.0 MPNLVSTLPCFLLQLVILNLLPRVSSIRKGIGFGATPICRHTVQGRYLLSDDKGHVCEPLAIDPESRCCPKKGDRYSCKGCSLLSNCCDSYEYCVSCCMN PSTTSEDEATKVSNVVKIVNAIGVSYIFRYVECIMIIRLIMNVKITILTALKVRIAKTSTSTNYSTLFDYCEGRCRHNSASVVHENAYISNFHHCFYLPS SALEDNATRPVVLEGRLAGVSVVIGQRGESCDSTCESNGQSCVVNKLLVLNECDVMKKYLGCEGGCLASMGSDQPAEVVDDAPKELSPGACLFTKALSMI SCDGWHNNTRRVCPCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59390			unknown protein		Lus10007819 [exp]	0	1
AT1G78010			tRNA modification GTPase, puta...		Lus10006309 [exp]	4.5	0.7100
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10025564 [exp]	5.4	0.7708
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10026886 [exp]	5.8	0.7547
AT5G46390			Peptidase S41 family protein (...		Lus10004545 [exp]	42.4	0.6996
					Lus10000429 [exp]	48.6	0.6682
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	59.2	0.6740
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004569 [exp]	60.6	0.6277
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10030681 [exp]	128.9	0.5996
					Lus10026245 [exp]	133.9	0.6231
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020819 [exp]	154.9	0.6305

Compare expression of checked genes

Lus10007819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.