Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007822 [exp] 246 / 1e-77 AT4G11170 86 / 7e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007829 [exp] 199 / 2e-59 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 178 / 4e-52 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10023092 [exp] 102 / 1e-26 ND 42 / 6e-04 Lus10007830 [exp] 103 / 4e-26 AT5G36930 120 / 5e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 100 / 6e-25 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10040576 [exp] 100 / 6e-25 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012311 [exp] 94 / 1e-22 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 94 / 1e-22 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007827 pacid=23143596 polypeptide=Lus10007827 locus=Lus10007827.g ID=Lus10007827.BGIv1.0 annot-version=v1.0 ATGGCGGAAATCCAATGGAACATCAACTCCAAAGCAGGCATCCAACAATATCAGCTGCTGGAAGGGCTCGAGAATCTCGAAGAGTTAGTTTCGCTAACGG TACATCATTTACCAAAAGTACAGAGACTGCCTTCACTGTCGAAGCTGATCAAGTTGAGTTACTTAAGCTTGCGAGACCTTCCGAGTTTGCAAGAGATTGC TGGACTTGGAGAGCTGAAGATGTTAAAACAGTTAAAGGTTAGTAGGTGTTTTTTGTTGGAAAGATTGTCCGTTGCAGATCTGCCCCTCTTGACTATGTAT CGTATTGAGTTAGACTTGAAGGGATGCACAAACTTAGTTGATGTCAACTCTGATCTTTCCCCCCTCACCGACACGACGAGAGGAGGTGATCTCGGAAAAC TCAAAGTAATCATCCGTTGGCCGCATGAACACGAGGAGGTGATTGACAAAAACTTGCTCTTCTGTCCGCAGCGTTTCTTGTGGAGTCACTAG
AA sequence Show only first row Show all	>Lus10007827 pacid=23143596 polypeptide=Lus10007827 locus=Lus10007827.g ID=Lus10007827.BGIv1.0 annot-version=v1.0 MAEIQWNINSKAGIQQYQLLEGLENLEELVSLTVHHLPKVQRLPSLSKLIKLSYLSLRDLPSLQEIAGLGELKMLKQLKVSRCFLLERLSVADLPLLTMY RIELDLKGCTNLVDVNSDLSPLTDTTRGGDLGKLKVIIRWPHEHEEVIDKNLLFCPQRFLWSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10007827 [exp]	0	1
AT1G03290			unknown protein		Lus10012382 [exp]	10.7	0.8438
AT4G11170			Disease resistance protein (TI...		Lus10007822 [exp]	21.9	0.8295
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	33.2	0.8204
AT1G24095			Putative thiol-disulphide oxid...		Lus10030833 [exp]	62.3	0.7942
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	89.4	0.7867
AT3G51500			unknown protein		Lus10014816 [exp]	98.1	0.8017
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	103.0	0.7814
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	107.8	0.7962
					Lus10040920 [exp]	130.2	0.7944
AT4G21450			PapD-like superfamily protein ...		Lus10018420 [exp]	149.8	0.7902

Compare expression of checked genes

Lus10007827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.