Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33950 495 / 3e-177 ATOST1, P44, SRK2E, SNRK2-6, SnRK2.6, OST1 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) AT1G78290 483 / 1e-172 SRK2C, SNRK2-8, SNRK2 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) AT1G10940 483 / 3e-172 ASK1, SNRK2-4, SNRK2.4, SRK2A SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) AT1G60940 482 / 4e-172 SNRK2-10, SNRK2.10, SRK2B SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) AT5G66880 482 / 4e-172 SNRK2-3, SNRK2.3, SRK2I SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) AT5G63650 481 / 2e-171 SNRK2-5, SNRK2.5, SRK2H SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) AT5G08590 473 / 1e-168 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT3G50500 471 / 2e-167 SPK-2-2, SNRK2-2, SNRK2.2, SRK2D SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2 (.1.2) AT4G40010 463 / 8e-165 SNRK2-7, SNRK2.7, SRK2F SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1) AT2G23030 440 / 9e-156 SNRK2-9, SnRK2.9 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNF1-related protein kinase 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004748 [exp] 682 / 0 AT4G33950 497 / 5e-178 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004382 [exp] 577 / 0 AT4G33950 518 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10040179 [exp] 573 / 0 AT4G33950 516 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10020997 [exp] 497 / 6e-178 AT4G33950 637 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10001367 [exp] 494 / 9e-177 AT1G60940 599 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Lus10015464 [exp] 493 / 3e-176 AT1G60940 596 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Lus10004291 [exp] 482 / 6e-172 AT5G63650 565 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Lus10019225 [exp] 482 / 6e-172 AT1G10940 568 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Lus10015676 [exp] 482 / 1e-171 AT4G40010 481 / 5e-171 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G084100 [exp] 571 / 0 AT4G33950 527 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.002G099700 [exp] 503 / 1e-180 AT1G78290 523 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.005G072600 [exp] 501 / 1e-179 AT1G78290 497 / 4e-178 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.004G218200 [exp] 499 / 1e-178 AT1G60940 593 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Potri.007G096400 [exp] 497 / 3e-178 AT4G33950 514 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.009G106900 [exp] 495 / 5e-177 AT4G33950 600 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.005G162500 [exp] 493 / 8e-177 AT1G78290 511 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.003G015400 [exp] 493 / 1e-176 AT1G10940 583 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.004G145500 [exp] 492 / 8e-176 AT4G33950 624 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.T011000 [exp] 484 / 4e-173 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007833 pacid=23143572 polypeptide=Lus10007833 locus=Lus10007833.g ID=Lus10007833.BGIv1.0 annot-version=v1.0 ATGGAGGAGAGGTACGAGTCGATCAAGGAGCTGGGTTCTGGGAACTTCGGAGTGGCGAGGCTGGTCAAAGATCGGAAGACGAAGGAGCTCCTTGCTGTCA AGTACATTGAAAGAGGCAAAACGATAGACGAGCATGTTCGGAGGGAAATCATCAACCACAGGTCGTTAACGCATCCAAATATCGTTAGGTTCAAAGAGGT GTTAGTGACTCCGACAGATCTAGCGATCGTGATGGAATATGCAGCTGGTGGAGAACTCTTCGAAAGGATATGCAGCGCTGGCAGGTTCAGCGAAGACGAG AGTAGATTTTTCTTCCAGCAGCTGATATCTGGTGTCAGTTACTGCCATTCCATGGAAATATGTCACAGAGATCTGAAGCTTGAGAACACACTTCTAGACG GAAGCCCTTCTCCGCGTCTTAAAATATGCGACTTTGGCTATTCGAAGTCCGGTCTTCTACATTCACAACCCAAATCGACGGTTGGAACGCCAGCCTATAT TGCGCCAGAAGTCCTGTCGCGGAAGGAGTATGATGGGAAGATTGCAGATGTTTGGTCATGCGGGGTGACGCTCTACGTGATGCTCGTCGGAGGGTACCCT TTCGAGGACCCCGACGATCCTAGGAACTTCCGCAAGACAATTGGGAGAATAATGAGCGTCCAGTACTCGATCCCGGATTACGTTCGTGTTTCGGCTGACT GCAAGCAGCTCCTTTCTTGCATCTTTGTTGCCAATCCTGCAAAGAGGATTAGCATTCCGGAGATCAAGCAGCACCCTTGGTTCCTCAAGAACATGCCCAA GGAGCTGGTCGAGATCGAGAAGTCCACAAACTCTGCAGCGAAACAACATGCACAGAGCGTGGAGGAGATCATGCAAATCATTGACGAGGCGAAGATACCG GGAAAAGGGTCGAAAGTTGGGGGCGAACAAGAAGCGAAAAATGGCTGTGCTGGGACGTCACATGATGATGACTTGGGTGGTTCCATGGAGTCTGACCTTA GTGGCGAATTTGAAGCTCAACCATAA
AA sequence Show only first row Show all	>Lus10007833 pacid=23143572 polypeptide=Lus10007833 locus=Lus10007833.g ID=Lus10007833.BGIv1.0 annot-version=v1.0 MEERYESIKELGSGNFGVARLVKDRKTKELLAVKYIERGKTIDEHVRREIINHRSLTHPNIVRFKEVLVTPTDLAIVMEYAAGGELFERICSAGRFSEDE SRFFFQQLISGVSYCHSMEICHRDLKLENTLLDGSPSPRLKICDFGYSKSGLLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGGYP FEDPDDPRNFRKTIGRIMSVQYSIPDYVRVSADCKQLLSCIFVANPAKRISIPEIKQHPWFLKNMPKELVEIEKSTNSAAKQHAQSVEEIMQIIDEAKIP GKGSKVGGEQEAKNGCAGTSHDDDLGGSMESDLSGEFEAQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10007833 [exp]	0	1
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10003362 [exp]	5.4	0.7631
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10015145 [exp]	5.5	0.7047
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10007232 [exp]	6.0	0.7328
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	10.0	0.7108
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	11.2	0.7269
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10037562 [exp]	14.3	0.6754
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	17.7	0.7069
					Lus10002746 [exp]	23.5	0.6940
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	25.4	0.6813
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	35.7	0.6632

Compare expression of checked genes

Lus10007833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.