Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012311 [exp] 237 / 4e-72 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000423 [exp] 234 / 6e-71 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10040576 [exp] 231 / 7e-70 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007821 [exp] 172 / 1e-49 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007825 [exp] 161 / 1e-45 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033349 [exp] 147 / 2e-44 ND / Lus10023092 [exp] 149 / 5e-44 ND 42 / 6e-04 Lus10007829 [exp] 154 / 5e-43 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007830 [exp] 152 / 9e-43 AT5G36930 120 / 5e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015000 [exp] 50 / 3e-07 AT3G14460 125 / 5e-30 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.017G015600 [exp] 45 / 2e-05 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.006G271800 [exp] 43 / 7e-05 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 42 / 0.0002 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 41 / 0.0003 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015300 [exp] 41 / 0.0005 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007834 pacid=23143598 polypeptide=Lus10007834 locus=Lus10007834.g ID=Lus10007834.BGIv1.0 annot-version=v1.0 ATGGCGACGATAAGTATGGTTGAAGGTCAGAATGCTATGCTACCATCATCCCTCACTACGATAGAAATTTCTCATCTACAATCTGATCGAATCCCGAATC TGAAGAATCTGAGCAACTTGACTGAATTACACCTTAGAACTAGTCCTTGTCTTCAAGAGATCCAAGGCCTCGAAGGGCTGAAATCATTAGAGTTTCTCCA TATCGTTGACATGAAAGAGTTGGCTAATATTGAGGGCCTAGGGAATCTCATGTCTTCTTCCAACTGCAAGTTGAGAGTGGTGGAGATAGTCGGATGTCCT CTTCTTCGTACATTCGAACAACATGATGCTGATACTAATGATGCATTTCCAAGACTTGCGGAGTTGTCAATTGGGGAAATCAGTTCGAATATTAACGATG AATCAGCCAGCCAACTACTGGAAGGGCTTGACAATCTTGGAGAGTTGGTTGAATTGCAAGTCTGCGGTTTAGCGAAAGTAGAGAGACTGCCTTCTCTATC AAAGCTACCCAAGTTGAGGAGGTTAACTGTGTATGGTCTTCCATGTCTACGAGAAATTGCGAGACTTGGAGATTTGAAGTCGTTAATATCGTTATCTGTG AGCGATTGCCTTTGA
AA sequence Show only first row Show all	>Lus10007834 pacid=23143598 polypeptide=Lus10007834 locus=Lus10007834.g ID=Lus10007834.BGIv1.0 annot-version=v1.0 MATISMVEGQNAMLPSSLTTIEISHLQSDRIPNLKNLSNLTELHLRTSPCLQEIQGLEGLKSLEFLHIVDMKELANIEGLGNLMSSSNCKLRVVEIVGCP LLRTFEQHDADTNDAFPRLAELSIGEISSNINDESASQLLEGLDNLGELVELQVCGLAKVERLPSLSKLPKLRRLTVYGLPCLREIARLGDLKSLISLSV SDCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63740			Disease resistance protein (TI...		Lus10007834 [exp]	0	1
					Lus10017955 [exp]	5.0	0.9589
					Lus10002859 [exp]	6.9	0.9552
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	7.5	0.9520
					Lus10036765 [exp]	8.5	0.9506
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	9.5	0.9506
AT2G16190			unknown protein		Lus10011284 [exp]	10.4	0.9506
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	11.2	0.9506
					Lus10038080 [exp]	11.5	0.9414
					Lus10006395 [exp]	12.0	0.9506
AT2G24960			unknown protein		Lus10042421 [exp]	14.1	0.9482

Compare expression of checked genes

Lus10007834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.