Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31970 542 / 0 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31940 541 / 0 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31950 486 / 2e-168 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 394 / 4e-132 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 377 / 2e-125 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 316 / 5e-102 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37370 298 / 3e-95 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 295 / 8e-94 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37310 295 / 1e-93 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT4G37320 293 / 3e-93 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032745 [exp] 911 / 0 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 445 / 4e-152 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 449 / 1e-148 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 434 / 5e-148 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 432 / 6e-147 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10032743 [exp] 431 / 3e-146 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 405 / 1e-136 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10025904 [exp] 405 / 5e-136 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 397 / 2e-133 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037500 [exp] 588 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 508 / 4e-177 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 493 / 5e-171 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 490 / 3e-170 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 471 / 1e-162 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037900 [exp] 471 / 2e-162 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.004G106600 [exp] 463 / 2e-159 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G038000 [exp] 462 / 1e-158 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 460 / 7e-158 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 456 / 3e-156 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10007837 pacid=23143579 polypeptide=Lus10007837 locus=Lus10007837.g ID=Lus10007837.BGIv1.0 annot-version=v1.0 ATGGACTTCAATGGATCTCAAGGATACTTGATGCCTTCTATCCACACTTCTGTTATCGGCTTCGTAAGGACTCGATCTGCCCGAAACAAAAAGCCAAACT CCACTTCACTTCCTCCGCAAGCAGGTGGCGCGTGGCCGATCATCGGCCACCTTCACAAACTAGGCGGCGCCGGCAAGCTCCTTCACAAGACCCTGGGTTC CATGGCCGACCAATATGGACCGGCTTTCACCATCAGGTTAGGTCAGCTCAATTGCTACGTGGTCAGCTCAGCTGACGTGGCGAAGGAGTGCTTCACCACC AGTGACAAGGCTCTTGGCTCGCGCCCTTGTTCAACAGCCACCAAACACATGTGCTATAACGACTCCGTTTTCGGGTTGGCCCCCACGACTCCTCACTGGC GAGAGATGAGGAAGATGGTGGTGCTTGAGCTTTTCTCCAACCAAGGCCTCAAATTGTTGAATAAAGTTGTCGCTTCGGAGCTTGACATCGCAATCCAGAA CCTTTATAGTTTGTGTGGTCGTGGATCGGCGCTTGTGAGGATAGACCAGTGGTTTGAGGATATCACCTATAATGTCGTCGTCAGGGTAGTGGCCGGGAAA CGTAACGGTGGAGGACAACAAGAGGCAGAGAAGTGCAAAAAGGCAGTAAGAGAGTTTTTCCGACTGCTGGGTATGTTTGTAGTTGGAGATGCAATACCAT GGTTAGGGTGGCTGGATTTCCAAGGCCATGTGAAGGAGATGAAGGAGACAGCTAAGGAAATGGATAGTGTGATAGGTGGGTGGGTTAATGAACATCGCAA TAGGAAAGTCTCTGGTCAGGTGAAGGCAGGGGACGAACAAGATTTCATTGACTTAATGTTGTCTTTTGAAGAGCAAGGCCGCTTTTCCGGATTCCCTTGC GATTCTGATACCAACATCAAGGCTACCTGTGTGTCTCTGATCGTGGGAGGCACAGACACTTCTTCCCTAGCAATGACATGGGCGATCTCGTTGCTGCTCA ACCATCCCTCAGTCTTAACCAAGGCACAACAAGAGCTGGACGTTCAAGTTGGACTCCATCGGCGAGTCAACGAATCCGACATCGAAAACCTCATCTACAT CCAAGCTATAATCAAAGAAACCCTGCGACTTTACCCGGTGGCTCCACTCACAGGTCCAAGGGAAGCATTAGAAGACTGCACAGTAGCTGGCTACCACGTC CCCAAAGGAACCCGGCTGATCATCAATGCATGGAAAATCCAGAGAGATCCCAAACTTTGGCCTAACCCGTTGGAATTCCAGCCGGAGAGATTCTTGACAA CAACCCACGGCCACATAGATGTGAAAGGCCGTAACTTCGAGCTTGTCCCTTTCGGTTCAGGGAGAAGAGTGTGCCCTGGAGCTTCATTATCGATGCAGAC ACTTAACCTCACCATTGCTAGGCTTCTTCAGGCCTTTGATTTGCAAACGCCCGGTGGTCTGCCGATTGACATGAATGAGAAGGCTGGAATCAACTTGCCT AAAGCAACTCCGTTGGAAGTTGTCCTTTCCCCAAGGATTGATGTTAACATGTTGTACCCGTAA
AA sequence Show only first row Show all	>Lus10007837 pacid=23143579 polypeptide=Lus10007837 locus=Lus10007837.g ID=Lus10007837.BGIv1.0 annot-version=v1.0 MDFNGSQGYLMPSIHTSVIGFVRTRSARNKKPNSTSLPPQAGGAWPIIGHLHKLGGAGKLLHKTLGSMADQYGPAFTIRLGQLNCYVVSSADVAKECFTT SDKALGSRPCSTATKHMCYNDSVFGLAPTTPHWREMRKMVVLELFSNQGLKLLNKVVASELDIAIQNLYSLCGRGSALVRIDQWFEDITYNVVVRVVAGK RNGGGQQEAEKCKKAVREFFRLLGMFVVGDAIPWLGWLDFQGHVKEMKETAKEMDSVIGGWVNEHRNRKVSGQVKAGDEQDFIDLMLSFEEQGRFSGFPC DSDTNIKATCVSLIVGGTDTSSLAMTWAISLLLNHPSVLTKAQQELDVQVGLHRRVNESDIENLIYIQAIIKETLRLYPVAPLTGPREALEDCTVAGYHV PKGTRLIINAWKIQRDPKLWPNPLEFQPERFLTTTHGHIDVKGRNFELVPFGSGRRVCPGASLSMQTLNLTIARLLQAFDLQTPGGLPIDMNEKAGINLP KATPLEVVLSPRIDVNMLYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10007837 [exp]	0	1
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	1.4	0.9577
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10022235 [exp]	4.5	0.9315
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	4.9	0.9312
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10002927 [exp]	9.5	0.8714
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10005882 [exp]	9.7	0.8154
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	10.2	0.9078
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	10.6	0.8973
AT4G24700			unknown protein		Lus10041942 [exp]	12.5	0.9139
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	12.5	0.9267
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	13.8	0.9260

Compare expression of checked genes

Lus10007837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.