Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22980 112 / 2e-29 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G06220 54 / 7e-09 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 53 / 8e-09 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 42 / 7e-05 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 40 / 0.0002 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004749 [exp] 187 / 1e-55 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031129 [exp] 54 / 6e-09 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 54 / 7e-09 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 54 / 8e-09 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031186 [exp] 43 / 3e-05 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 43 / 3e-05 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G152500 [exp] 132 / 2e-36 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 55 / 2e-09 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 55 / 2e-09 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.007G065600 [exp] 43 / 3e-05 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 43 / 3e-05 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 42 / 5e-05 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007838 pacid=23143565 polypeptide=Lus10007838 locus=Lus10007838.g ID=Lus10007838.BGIv1.0 annot-version=v1.0 ATGCATCCTAGCACACGTCGACCACGGCAAAACGACGCTCGCCGACCACCTAATCACCGGCACGGGAGGCGGCCACCTCCACCCGAAACGGGCGACGAAT CCACCTCAATAAGCGAGCATCCACTTCGGAACAGCGTAGTGTCCGGATTCCATCTGGCGGCATTAGCAGGCCTTCTGTGCGACGAACCAATGTGGGGGCT CGCGTTCATCGTCGAGACGCGTGTATCTCCGCTGGCCGAACAGCTTGACGAATTGGGATCCAACCAGCACGAGATATTCCAGGGGCAAGTAATGGCGACG GTGAAAGACGCGAGCAGATCCGCAGTACTCCAGAGGAAGCCGCGGATTGTTGAAGCGATGTACTTATGCGAGCTCAACACTAAGACCGATCAATTGGGGT TTCGTGGTTCTGAACTGGAGAAGAGCTCGAGTAGTGAAGGGATGAGATGA
AA sequence Show only first row Show all	>Lus10007838 pacid=23143565 polypeptide=Lus10007838 locus=Lus10007838.g ID=Lus10007838.BGIv1.0 annot-version=v1.0 MHPSTRRPRQNDARRPPNHRHGRRPPPPETGDESTSISEHPLRNSVVSGFHLAALAGLLCDEPMWGLAFIVETRVSPLAEQLDELGSNQHEIFQGQVMAT VKDASRSAVLQRKPRIVEAMYLCELNTKTDQLGFRGSELEKSSSSEGMR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10007838 [exp]	0	1
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	6.9	0.7141
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	24.0	0.6620
AT1G18490			Protein of unknown function (D...		Lus10027254 [exp]	32.8	0.6504
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	46.7	0.6826
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10002966 [exp]	72.5	0.5608
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019618 [exp]	73.0	0.6226
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	99.0	0.6103
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	103.7	0.6188
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	105.5	0.6355
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005116 [exp]	122.3	0.6103

Compare expression of checked genes

Lus10007838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.