Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55740 561 / 0 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19720 261 / 2e-76 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G18520 226 / 7e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 228 / 2e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G34400 216 / 6e-62 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G33680 210 / 3e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G25270 200 / 8e-57 OTP70 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 206 / 1e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26540 202 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 202 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004751 [exp] 1104 / 0 AT5G55740 577 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 233 / 3e-68 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039703 [exp] 224 / 5e-65 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 216 / 4e-62 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001230 [exp] 218 / 3e-61 AT1G19720 890 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039594 [exp] 213 / 5e-61 AT4G18520 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029482 [exp] 209 / 2e-59 AT4G18520 624 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033713 [exp] 207 / 7e-59 AT1G03540 726 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017446 [exp] 209 / 2e-58 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155400 [exp] 583 / 0 AT5G55740 706 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G018800 [exp] 237 / 3e-68 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G030200 [exp] 231 / 9e-66 AT1G19720 985 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G108000 [exp] 219 / 5e-63 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G215500 [exp] 222 / 2e-62 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G035100 [exp] 213 / 5e-61 AT4G13650 397 / 8e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 216 / 7e-61 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G170300 [exp] 213 / 1e-60 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068900 [exp] 207 / 6e-59 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 213 / 7e-59 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007840 pacid=23143609 polypeptide=Lus10007840 locus=Lus10007840.g ID=Lus10007840.BGIv1.0 annot-version=v1.0 ATGGCCACACCAATATCCACATTCCCTTCCATGGCGTCTCTACCACTCGCCACCACATCCACCGTATCAACCACCGTCGACACCACTCAATTCAATTCCA CTACCAACATCCGGCGAACTCTTCTCATCAAACCCCCCGCCGGAACTCGCCGCGATGGCTACAGATCTTACTTTCACAGCATCTCCTTCCTCTCCAGACA GGGCCGAGTCCGAGAAGCCCTCGGATTACTCAACGACATGGAAATGAAATCCTACCTCCCAGGCCAGGAAATCTACAGCGAGCTCCTCCAAGGATGCGTC ATCAACAAGGACGTCCCCACCGGCCAGCAACTCCACGCCAGGATCGTCAAGAACGGCGCCCTGTACTCTGCGAACGAGTACATTGAGACGAAATTGGTTA TCTTCTACGCGAAATGTGACATGTCAGAAGCTGCGGATACGCTTTTCCATAGGTTACAGTCTGAGACTCCGTTCTCATGGGCGGCGATCATCGGTTTACG GAGTAGGATGGGTGATAACGTCGGAGCTGTAAATTGTCTCTGTAAGATGGTCGAGAACGGTCTTTTCATTGATAATTTTGTTGCTCCGAATGTTCTGAAA GCATGCGGCGGATTGCAGTGGATTGAATGTGGGAGAGCGGTGCATGGATTGTCGATCAAGATAGGTCTTGATGCTTGCGTGTATGTTTCCAGCAGTCTCG TTGATATGTACTCAAAATGTGGTGTTTTGGAAGACGCACGGAAGGTGTTCGACGGAATGCCTGAGAGAAACACAGTCACTTGGAACTCGATGATCTCTGG ATACGCGCAGAACGGATTCAACGAGGAAGCTATCGACATGTTTCTTGAGATGAGGTTGGATGATTTCGAGCCTACTGTCGTCACTCTATTGAGTTTGCTT TCCGCTTCTGCGAATCTCTGTGCTGTTGAAGAAGGTAAGCAAGGGCATTCTCTTGCTGTAAGATGCGGGTTTGCGCTGGATAAGATCATGGGGAGTTCGA TCTTGAACTTCTATTCGAAACTCGGTCTGATCGAAGACGTGGAGTTGATTTTCGATACCATGCTCGACCAAGACGAGGTGACTTGGAATCTGTTGATCTC GTCTTACGTCCGGGTTTTCGAATCCGATAATGCGCTCGGAACGTGTCGTTCGATGAGATTAGCGAATCTGCGATTCGACGCAGTAACTCTCGCGTCCGTA CTATCTGTTTGTTCTCATACTAAGAATCTTACGCTCGGGAAAGAAGCACATTGTTTTTGTTTGAGGAACAGACTCTGTTCCGATATGGTCGTGGCGAGCG GGATTGTGGATATGTACACGAAATGTGGACGAATTGGCGATGCGGTTAGAGTTTTCGAGTTTACAATGAACGGGGAAACAAATATCGTGTTGTGGAACAC GATGTTGACTGCTTATGTCGATAGCGGGCATATCGGGCAGGCGTTGAAGCTGTTCTATAGGATGGAGCTGGACAGCGTGCCGCACGATGTCACGTCGTGG AATGCGGTGGTTGTGGGGTTTTTGAAGAACGGAGAGTTGGATGAGGCGAAGTACATGTTCTCGAAAATGCAGTCTGCTGGTATCGCTCCGAATTCGACTA CGTTGATGACTCTAATATCCGGTCTCGTTCGGAACTGTTGTGGAGGCGAATGCAGCGACATTGGTTCTCTGGTGCGGAAAGTCGAAGAATCGGGGGTAAG ATCTAACGTTCTGAACATCATTACCACATGCTCTGGTGATTCGACATTGTTCCGTGATCTGAAAGCTATATATGGCTTTGTCTTGAGGCATTACCTGTAG
AA sequence Show only first row Show all	>Lus10007840 pacid=23143609 polypeptide=Lus10007840 locus=Lus10007840.g ID=Lus10007840.BGIv1.0 annot-version=v1.0 MATPISTFPSMASLPLATTSTVSTTVDTTQFNSTTNIRRTLLIKPPAGTRRDGYRSYFHSISFLSRQGRVREALGLLNDMEMKSYLPGQEIYSELLQGCV INKDVPTGQQLHARIVKNGALYSANEYIETKLVIFYAKCDMSEAADTLFHRLQSETPFSWAAIIGLRSRMGDNVGAVNCLCKMVENGLFIDNFVAPNVLK ACGGLQWIECGRAVHGLSIKIGLDACVYVSSSLVDMYSKCGVLEDARKVFDGMPERNTVTWNSMISGYAQNGFNEEAIDMFLEMRLDDFEPTVVTLLSLL SASANLCAVEEGKQGHSLAVRCGFALDKIMGSSILNFYSKLGLIEDVELIFDTMLDQDEVTWNLLISSYVRVFESDNALGTCRSMRLANLRFDAVTLASV LSVCSHTKNLTLGKEAHCFCLRNRLCSDMVVASGIVDMYTKCGRIGDAVRVFEFTMNGETNIVLWNTMLTAYVDSGHIGQALKLFYRMELDSVPHDVTSW NAVVVGFLKNGELDEAKYMFSKMQSAGIAPNSTTLMTLISGLVRNCCGGECSDIGSLVRKVEESGVRSNVLNIITTCSGDSTLFRDLKAIYGFVLRHYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	0	1
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	1.0	0.9634
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10013630 [exp]	2.0	0.9045
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	2.0	0.9032
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	4.9	0.8879
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	6.2	0.9043
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	6.3	0.8943
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10011941 [exp]	7.1	0.8743
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	7.9	0.8925
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	8.7	0.9000
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	9.5	0.8832

Compare expression of checked genes

Lus10007840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.