Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08960 1473 / 0 ARM repeat superfamily protein (.1) AT1G26170 81 / 4e-15 ARM repeat superfamily protein (.1) AT3G59020 60 / 7e-09 ARM repeat superfamily protein (.1.2) AT2G46520 50 / 9e-06 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT2G31660 47 / 8e-05 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT4G27640 46 / 0.0001 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004753 [exp] 1862 / 0 AT3G08960 1432 / 0.0 ARM repeat superfamily protein (.1) Lus10008367 [exp] 107 / 1e-27 AT3G08960 93 / 2e-23 ARM repeat superfamily protein (.1) Lus10026726 [exp] 59 / 1e-08 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10025509 [exp] 59 / 2e-08 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10035079 [exp] 50 / 2e-05 AT1G26170 1225 / 0.0 ARM repeat superfamily protein (.1) Lus10030241 [exp] 49 / 2e-05 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119900 [exp] 1546 / 0 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 70 / 8e-12 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 69 / 2e-11 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.014G149600 [exp] 62 / 3e-09 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 56 / 1e-07 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G172700 [exp] 53 / 1e-06 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.014G100000 [exp] 53 / 1e-06 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007842 pacid=23143597 polypeptide=Lus10007842 locus=Lus10007842.g ID=Lus10007842.BGIv1.0 annot-version=v1.0 ATGGCGCTATCGACTTCCGATTTGCCAGTGATATACTCGCTGCTGACGAATTCCATGAGCAGCGACGAGACCGTGCGGAGGCCAGCTGAGGCCGCGCTGA CGCAGTCCGAGAGGATGCCTGGTTTTTGCTCATGCTTGATGGAAGTGATAATCGCGAAGGATTTAGCAGCGCAGGTTGGCGTTAGGTTGATGGCTACCGT TAATTTCAAAAACTGCATCAACCGGCACTGGAGAAGCAGGCGCGATTCAACGGGGATGAGCATTGAAGAGAAGAGTCACTTGCGGCAGAAACTTTTGTCG CACTTGAGAGAAGAGGACTATAAGATAGCTTTGTTGTTGGCTGTGGTCATTTCGAAGATTGCTCGCATTGATTATCCCAAGGATTGGCCGGAGCTCTTTA CAATTTTGGCGCAACAGCTTCAATCAGCTGATGTTCTCACTTCCCACCGGATTTTTATGATTCTCTTCCGAACTTTGAAGGAGTTATCAACTAAACGCCT CCCAGCTGATCAAAAGAACTATGCTCAGATATCTGCCCAACTCTTTGACTATTGCTGGCACCTTTGGCAAAGTGATATGAGAACGATACTGCATAGTTTC TCAACACTTGCTCAGAATTGTGATCCAAATGCTGAGCAGCAGCAAGATGAACTTTATCTGATCAGTGAGAGATGGCTGTTGTGTTTGAAGATTATACGAC AGTTGATATTATCAGGTTTTCCAAGTGATGCAAAGGCTGTACAGGAGGTCAGGCCTGTTAAGGAGGTCTCGCCTATGATCTTGAATGCGATTCAGTCATT GCTTCCATATTATGCATCTTTTGAGAAGGGAAATAGAAACATGTGGGATTTTCTGAAGAGGGCAACTACCAAAATGATGAAGGTCTTAATTGCTATTCAA AACAAGCATCCTTATTCATTCAGTGATAAGTCTGTCCTGCCACCGGTTTTGGATTTTTGTTTAAACAAGATTACTGCACCTGATGAGGAGCTGTTTTCGT TTGAGCAATTTCTGATTCAATGTATGGTAATGGCTAAGTGTGTGCTTGAATGTAATGAATATAAGCGGAGTCATACTGGTCGGGTGATGGATGAAAAAGG AATTACATTAGAGCAGGTGAAGAAAAATATGTCTAATATGTCTAGTGCTGTCGGTGGTGTTCTCACCTCACTGCTTCCGAGTGAACGCATAATACTCTTG TGCAATGTGTTGATAAGAAGGTATTTTGTTCTAACGGCTGCTGACTTGGAAGAATGGTCCAAAAGTCCAGAATCTTTTCACCATCAACAGGACATGGTTC AGTGGACAGAGAAACTAAGGCCTTGTGCTGAAGCTTTGTACATTGTTCTATTTGAAAACCATAGCCAGCTTTTGGGTCCTGTTGTGGTATCCATCCTCCA AGAGGCAATGTCTGGTTGCCCTGCATCAGCAACAGAAATTACACCGGGCTTGCTCTTGAAAGAGGCTGCTTATGGAGCTGCTGCATATATTTACTATGAG CTTTCAAACTATCTAAGCTTCAAAGATTGGTTCAATGGTGCCTTATCTCTTGAACTGTCTAATGATCATCATAATATGCTAATCATCCACCGAAAAGTTG CAATTGTACTGGGGCAATGGGTTTCTGAGATCAAAGATGATACGAAAAGACCAGTGTATTGTGGATTGATCAAATTACTACAAGACAAAGACCTGTCAGT CAAACTAGCAGCTTGTCGATCTCTGTGTTTCCATATCGAAGATGCCAATTTTTCAGAGCACCAATTTGTGGATCTTCTTCCTGTTTGCTGGGACTCGTGT TTCAAGTTGTTTGATGATGTTGAAGAATTTGACTCAAAGATTCAGGTTTTGAACTTGATCACCATTCTTATTGCACACGTCGGTGAGATCATTCCATTTG CGAACCAGTTGGTCCAGTTCTTTCGGGAGGGCTGGGACGAATCTTCTGGTGAGAGTCTACTGCAAATGCAGCTTCTCGTTGCTCTAAAGCATTTTGTTCT TGCACTTGGTTACCGATCACCGAATTGCTACAGCGTACTGCTACCTATTCTGCAAAGTGGAATCGATATAAATAACCCAGATGAACTCAACCTTCTAGAG GACAGTATGCTGTTGTGGGAAGCCACACTTTCTAATGCTCCTGCGATGGTGCCTCAGTTGTTAACATTTTTCCCTTCTTTAGTGGGAATCCTGGATAGAA ACTTCGACCATTTGCAGGTTGCTGTTGATATAATCGAGGATTATGTGTTGTTGGGGGGAACCGAATTTCTGAACATGCATGCTTCTGCTGTTGCGAAAAT TCTGGATCTGATAGTCGGGAATGTCAACAACGAAGGGATGCTTTCCATTCTTCCTTTGATTGATATGTTAATCCAGTGTTTCCCCATGGAACTTCCTCCA CTTATCAACGGTACCTTACAAAAACTAATTATCGTCTGTTTGGGGGGAGGAGATGAGCTCGATCCTTCCAAAGTAGCAGTTAAAGCATCTTCATCCGCCA TCCTCGCAAGAATATTGGTAATGAACACCAACTATCTTGCCCAGTTAACGGCAGAACCATCACTTCCTCTACTCCTCCAGCAAGCAGGTATACCAGTCCC GGAGAACACACTTCTATCACTAGTCGACATTTGGCTCGACAAGGTGGATAATGCATCGCCCCACCAGAGAAAAGCGTTTGGGCTGGCACTTTCGATAATC TTGACGCTAAGGCTGCCTCAGGTCCTTGACAAGCTTGATCTGATCCTTAGTGTGTGCACTACCATAATACTTGGAGATACTGATGAGCTTACCGACGAAG ATTCCAGTGGTGATAACATGAGTTCCGGCAGATCCCATGGGGAGGGCACGATCATGAGTAAAGAACTTCGAAGAATTCAGATCGAGGATTCGGACCCCAT CAACCGGTTGTCATTAGGGAACATAGTGAAAGAGAACCTTCAAACGTGTGCTGCAGTCCACGGCGAAGCCTTCAGTGCAGCTATCGGTCGAATGCATCCC TCCGCATTTGCCCAACTGAAGCAAGCTCTGAAGATGCCATAA
AA sequence Show only first row Show all	>Lus10007842 pacid=23143597 polypeptide=Lus10007842 locus=Lus10007842.g ID=Lus10007842.BGIv1.0 annot-version=v1.0 MALSTSDLPVIYSLLTNSMSSDETVRRPAEAALTQSERMPGFCSCLMEVIIAKDLAAQVGVRLMATVNFKNCINRHWRSRRDSTGMSIEEKSHLRQKLLS HLREEDYKIALLLAVVISKIARIDYPKDWPELFTILAQQLQSADVLTSHRIFMILFRTLKELSTKRLPADQKNYAQISAQLFDYCWHLWQSDMRTILHSF STLAQNCDPNAEQQQDELYLISERWLLCLKIIRQLILSGFPSDAKAVQEVRPVKEVSPMILNAIQSLLPYYASFEKGNRNMWDFLKRATTKMMKVLIAIQ NKHPYSFSDKSVLPPVLDFCLNKITAPDEELFSFEQFLIQCMVMAKCVLECNEYKRSHTGRVMDEKGITLEQVKKNMSNMSSAVGGVLTSLLPSERIILL CNVLIRRYFVLTAADLEEWSKSPESFHHQQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMSGCPASATEITPGLLLKEAAYGAAAYIYYE LSNYLSFKDWFNGALSLELSNDHHNMLIIHRKVAIVLGQWVSEIKDDTKRPVYCGLIKLLQDKDLSVKLAACRSLCFHIEDANFSEHQFVDLLPVCWDSC FKLFDDVEEFDSKIQVLNLITILIAHVGEIIPFANQLVQFFREGWDESSGESLLQMQLLVALKHFVLALGYRSPNCYSVLLPILQSGIDINNPDELNLLE DSMLLWEATLSNAPAMVPQLLTFFPSLVGILDRNFDHLQVAVDIIEDYVLLGGTEFLNMHASAVAKILDLIVGNVNNEGMLSILPLIDMLIQCFPMELPP LINGTLQKLIIVCLGGGDELDPSKVAVKASSSAILARILVMNTNYLAQLTAEPSLPLLLQQAGIPVPENTLLSLVDIWLDKVDNASPHQRKAFGLALSII LTLRLPQVLDKLDLILSVCTTIILGDTDELTDEDSSGDNMSSGRSHGEGTIMSKELRRIQIEDSDPINRLSLGNIVKENLQTCAAVHGEAFSAAIGRMHP SAFAQLKQALKMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	0	1
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10017729 [exp]	1.0	0.8671
AT1G17500			ATPase E1-E2 type family prote...		Lus10037622 [exp]	4.8	0.7997
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10027906 [exp]	6.5	0.8431
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10000941 [exp]	8.1	0.8434
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	8.7	0.8240
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	9.6	0.8479
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10035243 [exp]	11.3	0.8460
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	12.2	0.8497
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10001967 [exp]	12.8	0.7771
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	21.2	0.8355

Compare expression of checked genes

Lus10007842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.