Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47310 253 / 2e-85 PPPDE putative thiol peptidase family protein (.1) AT4G17486 252 / 2e-85 PPPDE putative thiol peptidase family protein (.1.2) AT1G47740 216 / 2e-70 PPPDE putative thiol peptidase family protein (.1.2) AT2G25190 209 / 3e-68 PPPDE putative thiol peptidase family protein (.1) AT1G80690 206 / 2e-67 PPPDE putative thiol peptidase family protein (.1) AT5G25170 200 / 6e-65 PPPDE putative thiol peptidase family protein (.1) AT4G31980 198 / 2e-59 unknown protein AT4G25680 87 / 1e-20 PPPDE putative thiol peptidase family protein (.1) AT4G25660 85 / 9e-20 PPPDE putative thiol peptidase family protein (.1) AT3G07090 60 / 8e-11 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004755 [exp] 380 / 8e-136 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 333 / 3e-117 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 290 / 4e-96 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10043293 [exp] 220 / 2e-72 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10013657 [exp] 216 / 3e-71 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10019437 [exp] 217 / 4e-71 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 216 / 5e-71 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 215 / 2e-70 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 211 / 2e-69 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080300 [exp] 279 / 7e-96 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 276 / 7e-95 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.T126004 [exp] 221 / 1e-72 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 219 / 3e-72 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 219 / 6e-72 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 218 / 8e-72 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 218 / 8e-72 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G180400 [exp] 211 / 3e-69 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.006G154400 [exp] 211 / 3e-69 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G021700 [exp] 210 / 7e-69 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10007844 pacid=23143563 polypeptide=Lus10007844 locus=Lus10007844.g ID=Lus10007844.BGIv1.0 annot-version=v1.0 ATGCATTTCTTCCCTTTCAGCTCAAGCTCACACAAGGATGGCGGGAGTCGTGTTCCGGTGTATTTGAACGTGTACGATCTCACCACTGTGAATAATTACC TCTATTGGCTCGGCCTCGGCATCTTCCATTCCGGCATTGAAGTCCATGGAATGGAGTTCAGTTTCGGAGCACACGAGTACCCTAGCAGTGGGATATTTGA GGTGCAACCACGGAGTTGTCCAGGCTTCATCTTCCGACGAGCAGTGTTGCTTGGCAAGACCAGCTTGTCACGCTCAGAAGTTCAGGAGATGATGGAGCAT ATCTCGGCCGACTTCCATGGTGACTGTTATCACTTGATCTCCAAGAACTGCAATCACTTCACAGATGAAGCTTGCTTGAAACTAACGGGGAAGGCTGTCC CTGGATGGGTAAATCGGTTGGCTCGATTAGGTTCTTTCTGCAATTGTCTACTACCAGAAAGCATTAAGGTTGCACCAGTTCAACATTTACCTGAACGAGC AGCACATAACGATGACGACGATGCCACAGCATCAATCCTATCATCTGCCTCGTTGGCAAGCGACGAAGATAACTCGAATCAGCATCTCTTGCCCATACCC AACGCCGAAGTCTCGTTTGTAAAGGAAAAACCTATCGACCCATCAGGCTAG
AA sequence Show only first row Show all	>Lus10007844 pacid=23143563 polypeptide=Lus10007844 locus=Lus10007844.g ID=Lus10007844.BGIv1.0 annot-version=v1.0 MHFFPFSSSSHKDGGSRVPVYLNVYDLTTVNNYLYWLGLGIFHSGIEVHGMEFSFGAHEYPSSGIFEVQPRSCPGFIFRRAVLLGKTSLSRSEVQEMMEH ISADFHGDCYHLISKNCNHFTDEACLKLTGKAVPGWVNRLARLGSFCNCLLPESIKVAPVQHLPERAAHNDDDDATASILSSASLASDEDNSNQHLLPIP NAEVSFVKEKPIDPSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17486			PPPDE putative thiol peptidase...		Lus10007844 [exp]	0	1
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	11.0	0.9182
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	12.0	0.9253
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10026949 [exp]	16.5	0.9156
AT4G15420			Ubiquitin fusion degradation U...		Lus10031538 [exp]	20.2	0.8772
AT4G35240			Protein of unknown function (D...		Lus10023949 [exp]	22.8	0.8632
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	29.9	0.8787
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10000758 [exp]	30.0	0.9131
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	30.0	0.8983
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	35.9	0.9030
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10008170 [exp]	43.4	0.9019

Compare expression of checked genes

Lus10007844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.