Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 71 / 1e-13 RING/U-box superfamily protein (.1) AT2G25410 47 / 6e-06 RING/U-box superfamily protein (.1) AT2G46495 46 / 2e-05 RING/U-box superfamily protein (.1) AT2G46494 44 / 5e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004756 [exp] 407 / 4e-145 AT5G53110 80 / 4e-17 RING/U-box superfamily protein (.1) Lus10014923 [exp] 55 / 2e-08 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10032382 [exp] 44 / 0.0001 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10023086 [exp] 42 / 0.0004 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154500 [exp] 153 / 5e-45 AT2G25410 121 / 5e-32 RING/U-box superfamily protein (.1) Potri.003G080200 [exp] 152 / 2e-44 AT2G25410 106 / 4e-26 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 64 / 1e-11 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.015G018000 [exp] 62 / 1e-10 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G011500 [exp] 57 / 3e-09 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 57 / 4e-09 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.015G018200 [exp] 53 / 8e-08 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.003G139900 [exp] 52 / 1e-07 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 52 / 2e-07 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 52 / 2e-07 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007845 pacid=23143611 polypeptide=Lus10007845 locus=Lus10007845.g ID=Lus10007845.BGIv1.0 annot-version=v1.0 ATGAAACCTCAAATCTTTCCACTCTTCTTCTTCTTCCTCTTCACCACTTCACAATCCTTCTCATGCCCACCAATCAAATGCAACCCACAAGGCCCTGAAA TCCACTACCCATTCAGAGAAACCACGCACCACCACCCCCACTGTGGTCAGGGTGGGCCCGGGTTCGACCTCACTTGCCACCACAACACAACCACAATTCA GTTGTCGTCGGTTGACTTGCTGGTCAAGTCAATCGACTACGTTGACTCTCGGGTCGACCTCCTCGACCCGAGAGGCTGTGTCCATGGAGTGTTCATGGAC CTCAACCTGACCGGTACACCATTCGAGTATGCCTATAAGGTGGAGGATTTCGAGTACGTCAACTGCTCGAGGAGGGTCGCTGGGTTGGATCAAGTGGGGT GCTTGAGTGGTGAGCAGTCCCATGTTTATACTGTGGAGAAGGGAAGTGCTGATCAGAGGCTTGATGGGTTAAGGTTCTGTAAGGAGATGAAGACTGTTGC TATTCCTTTTGGTTACAGTCCTTACCTCGCTGATGATGGATTCGGTCTTGGGTTGATCTGGACCGTTGATGATGGTGAGATCATGGGAAATGGATTGCTT TCTAAAGGTTTGGCAACAAACAACTGTGTAGGGAGAGTGATACTATGCAACAAGTGGTTGAAGTTTGCGTTATGCATTGCATTAGTAGCATTGCTTTGTG GCGTCAAAATGTACTGTCACACAAACAGAGTGGAACAACAGTTGGAGGAGATTCGAAGATCTCATCTACTTGTTGATGATCAGTCACTCAAACGCCGTGA AGGAGTAATTTGA
AA sequence Show only first row Show all	>Lus10007845 pacid=23143611 polypeptide=Lus10007845 locus=Lus10007845.g ID=Lus10007845.BGIv1.0 annot-version=v1.0 MKPQIFPLFFFFLFTTSQSFSCPPIKCNPQGPEIHYPFRETTHHHPHCGQGGPGFDLTCHHNTTTIQLSSVDLLVKSIDYVDSRVDLLDPRGCVHGVFMD LNLTGTPFEYAYKVEDFEYVNCSRRVAGLDQVGCLSGEQSHVYTVEKGSADQRLDGLRFCKEMKTVAIPFGYSPYLADDGFGLGLIWTVDDGEIMGNGLL SKGLATNNCVGRVILCNKWLKFALCIALVALLCGVKMYCHTNRVEQQLEEIRRSHLLVDDQSLKRREGVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	0	1
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	1.4	0.9270
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	2.2	0.9362
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	7.1	0.9062
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	7.7	0.9222
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	8.9	0.9172
AT1G10380			Putative membrane lipoprotein ...		Lus10037236 [exp]	10.6	0.9068
					Lus10010378 [exp]	11.0	0.9181
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	12.2	0.9165
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	12.7	0.9140
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015710 [exp]	13.7	0.8683

Compare expression of checked genes

Lus10007845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.