Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16790 90 / 5e-20 hydroxyproline-rich glycoprotein family protein (.1) AT3G60380 59 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004758 [exp] 311 / 3e-102 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1) Lus10028193 [exp] 45 / 4e-05 AT3G60380 112 / 2e-25 unknown protein Lus10042896 [exp] 42 / 0.0004 AT3G60380 91 / 1e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079900 [exp] 136 / 3e-36 AT4G16790 114 / 8e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G155000 [exp] 122 / 2e-31 AT4G16790 114 / 5e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.014G045300 [exp] 51 / 4e-07 AT3G60380 89 / 3e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007846 pacid=23143576 polypeptide=Lus10007846 locus=Lus10007846.g ID=Lus10007846.BGIv1.0 annot-version=v1.0 ATGGCGGATCACTTCACGAAACAACAGCAGCAACCGGCCAAACTCTACTCACATTTCCTCTACAAGGCGCTCATAGTCGCCGTCTTCATGTTCATCCTCC CTCTCCTCCCTCCCCCACAATCCGCGCCTGACTTCATCGGCACCGGAGGCTGGGAGTTCCTCCACCTTGTCTTCGTCGGCATCGCCGTCTCCTACGGCCT CTTCAGCCGCCGCCGCCGCGATGACGGTGATGACCAACACTCCGATCGGAAAGATTCATCCGCTGCTAACGATAACCTCAATAAGTTCGACGCGGCTCAT TCCTACGTCTCCAAGTTTCTGCCGGTTGCGTCGGTGTTTGACGATGAGGACGACGGAGGAGGAGAAGGCGGCGGTGTGACTACGAAGGTGGAGACGTGGA CTAGCCAGAGGGAGAAGCCGTTGTTGCTGCCCATTCGGAGCTTGAAAACGACTGGGTCGGATTCCGATTCTAGATCGGAGGAGGCTGATTCCGTGCTTCG ATCGCCGGTACCGTGGAGGTCTAGATCAGGGAGGATTCAATTTGAGAGATCCGCCGTGAATTCGGTAATCGCTCCGTGTCCTCCTCCGCCGCCACCACCA CCTCCGCCACCGCCACAGTCGATTGCTTCTTCTTCTCGATCGATCCGGCCGCCGAGAAATCCTCCGAAATCTTCTGCTTCTTCAATTCCTCAATTCTCAT CCGACGAGATACAAGCTAAAAGCGCTGAGGATTTCGTCAGAAGGAAAACTATCTTCCGATCTCCTCCTCCACCACCTCCTCCGCCGCCGCCGCCTCCTCG TTCCGTCACCTCGTTCTGTAAGATCATCCTCAAGGAGGCCGCCTCCTCCTCCCTCAGCTGA
AA sequence Show only first row Show all	>Lus10007846 pacid=23143576 polypeptide=Lus10007846 locus=Lus10007846.g ID=Lus10007846.BGIv1.0 annot-version=v1.0 MADHFTKQQQQPAKLYSHFLYKALIVAVFMFILPLLPPPQSAPDFIGTGGWEFLHLVFVGIAVSYGLFSRRRRDDGDDQHSDRKDSSAANDNLNKFDAAH SYVSKFLPVASVFDDEDDGGGEGGGVTTKVETWTSQREKPLLLPIRSLKTTGSDSDSRSEEADSVLRSPVPWRSRSGRIQFERSAVNSVIAPCPPPPPPP PPPPPQSIASSSRSIRPPRNPPKSSASSIPQFSSDEIQAKSAEDFVRRKTIFRSPPPPPPPPPPPPRSVTSFCKIILKEAASSSLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16790			hydroxyproline-rich glycoprote...		Lus10007846 [exp]	0	1
AT4G16790			hydroxyproline-rich glycoprote...		Lus10004758 [exp]	1.4	0.9274
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	2.4	0.9234
AT5G06850			C2 calcium/lipid-binding plant...		Lus10021030 [exp]	3.0	0.9107
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	4.9	0.8767
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	6.9	0.9061
AT1G12380			unknown protein		Lus10032194 [exp]	7.5	0.8221
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10026527 [exp]	8.0	0.7955
AT1G52140			unknown protein		Lus10025828 [exp]	9.5	0.8836
AT3G16330			unknown protein		Lus10038274 [exp]	17.9	0.8861
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	21.2	0.8542

Compare expression of checked genes

Lus10007846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.