Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19940 76 / 5e-15 F-box and associated interaction domains-containing protein (.1) AT3G10430 76 / 5e-15 F-box and associated interaction domains-containing protein (.1) AT4G04690 74 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT5G62660 74 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT4G19930 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT1G30790 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT3G17710 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) AT5G50220 69 / 7e-13 F-box family protein (.1) AT5G62510 68 / 2e-12 F-box family protein (.1) AT1G32420 67 / 3e-12 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007848 [exp] 278 / 1e-90 AT3G10430 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) Lus10004758 [exp] 127 / 6e-32 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1) Lus10004586 [exp] 107 / 1e-26 AT2G27520 45 / 2e-05 F-box and associated interaction domains-containing protein (.1) Lus10011994 [exp] 104 / 3e-25 ND / Lus10008870 [exp] 71 / 4e-13 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 68 / 1e-12 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 68 / 3e-12 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 67 / 6e-12 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10031020 [exp] 64 / 4e-11 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099733 [exp] 95 / 1e-21 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.005G114900 [exp] 96 / 2e-21 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.017G012200 [exp] 87 / 1e-18 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G170300 [exp] 85 / 7e-18 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 81 / 6e-17 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.015G013500 [exp] 77 / 2e-15 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.012G014700 [exp] 74 / 2e-14 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.012G014300 [exp] 74 / 3e-14 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.008G199800 [exp] 73 / 5e-14 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 72 / 1e-13 AT3G06240 138 / 5e-37 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007847 pacid=23143553 polypeptide=Lus10007847 locus=Lus10007847.g ID=Lus10007847.BGIv1.0 annot-version=v1.0 ATGGAGACATCTATCTTTCTCAGCTCACCTCCTGCACTTGTTTTCACATTCGTCATCCTCTTGATACTCTCCTTTCTTCTTCTCAGGTGCATCTCCAATT CCAGGAACCGCCGCCCAGCCCCCGATCTGCCGTTCGACATCGTAATCGAAATCCTCTCTCACCTCCCTGTCAGATCCCTAATCCGATTCAAATCCGTATC AAAACTCTGGAACCAAATCATCTCCACCAGCCCCTACCTCGTCACTACGCACCGCATCAGAAACAACCGTCGAAAGGGCATCATATGCAATCATTTGCTA CAATACCCCGATAATCGGTACCAACATCGAACGGTCTTGATTTCTTCTCCTGATAAACCCTTCCCGCTGGTCGATTGCGACCGCAGCCACGCCGTGATCT GCAGCTCAGGCGATCTAGGCCTTTTGCTTCTCCAAATCGAACATCAACATTACGCTCTGTGGAACCCAGCCACTCGCCAGGTAAAGCATCTTCCCCATAT ACCGTCACTTGGACCTCATAAGAGATCGTTCGTTGATGCCTGTGGAGTCGGATTAGATCCGGTTTCTAACGCCGTCAAAGTTGTGCTCGTTCGTAACTAT AACAGCAGTGTGTGGAAGAACATAGCAGCAGTTTATGTTTATACATTAGTAGGAGGGTGGAGGAAGTTAGCAGGTGAAGATTGGCCTTGCAGCCTCGTCC GTTCTACACATTTGAATGGTTCAATTTACTGGTTTTGCATTTCTAAGCCTGAATATGATCTCGTCACGTTTGATTTGGGGACTGAAGTTTTCCGTAGGGT AAGCTTACGTCCTCTGTATGACCTTTATCATAGAAACTCAATCACGGGACCGTACATCTATCGCGATTCGATTGCTGTATTTTGGAGCGAGACCCTGGTC CACTCCATTGTCGACGTATGGCTGCTGAATGAGGAGTTTTGTTGGATCCAGCATTCGAGTATCGGACCTTTCGCTCAAGGGCTCGAGGTTCGCGGATGTT GGAACGACGATCGGCTTGTGGCATTGCAGTGGAAGAATAAGAATCCGAATGGTGTCGTTGTTTTCGATACCAACGAAAAATCAGAGCTATAA
AA sequence Show only first row Show all	>Lus10007847 pacid=23143553 polypeptide=Lus10007847 locus=Lus10007847.g ID=Lus10007847.BGIv1.0 annot-version=v1.0 METSIFLSSPPALVFTFVILLILSFLLLRCISNSRNRRPAPDLPFDIVIEILSHLPVRSLIRFKSVSKLWNQIISTSPYLVTTHRIRNNRRKGIICNHLL QYPDNRYQHRTVLISSPDKPFPLVDCDRSHAVICSSGDLGLLLLQIEHQHYALWNPATRQVKHLPHIPSLGPHKRSFVDACGVGLDPVSNAVKVVLVRNY NSSVWKNIAAVYVYTLVGGWRKLAGEDWPCSLVRSTHLNGSIYWFCISKPEYDLVTFDLGTEVFRRVSLRPLYDLYHRNSITGPYIYRDSIAVFWSETLV HSIVDVWLLNEEFCWIQHSSIGPFAQGLEVRGCWNDDRLVALQWKNKNPNGVVVFDTNEKSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10430			F-box and associated interacti...		Lus10007847 [exp]	0	1
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	6.7	0.7896
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	6.9	0.8010
AT4G28100			unknown protein		Lus10018524 [exp]	6.9	0.8068
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	7.5	0.8009
AT4G15930			Dynein light chain type 1 fami...		Lus10006500 [exp]	9.2	0.7857
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	10.0	0.7981
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	16.3	0.7852
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	31.6	0.7676
AT5G14230			unknown protein		Lus10041588 [exp]	34.9	0.6823
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	36.1	0.7093

Compare expression of checked genes

Lus10007847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.