Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10430 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT4G19940 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT3G08750 49 / 4e-06 F-box and associated interaction domains-containing protein (.1) AT4G19930 49 / 5e-06 F-box and associated interaction domains-containing protein (.1) AT4G09190 48 / 8e-06 F-box and associated interaction domains-containing protein (.1) AT1G30790 45 / 4e-05 F-box and associated interaction domains-containing protein (.1) AT5G62660 45 / 9e-05 F-box and associated interaction domains-containing protein (.1) AT5G18160 44 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT1G47790 44 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT1G59675 42 / 0.0002 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007847 [exp] 232 / 1e-72 AT3G10430 76 / 7e-15 F-box and associated interaction domains-containing protein (.1) Lus10004586 [exp] 101 / 7e-24 AT2G27520 45 / 2e-05 F-box and associated interaction domains-containing protein (.1) Lus10011994 [exp] 101 / 8e-24 ND / Lus10004758 [exp] 96 / 7e-21 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1) Lus10001105 [exp] 44 / 0.0001 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10018460 [exp] 44 / 0.0003 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10038864 [exp] 40 / 0.0003 AT1G47790 50 / 2e-08 F-box and associated interaction domains-containing protein (.1) Lus10013872 [exp] 42 / 0.0009 AT3G06240 101 / 2e-23 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099733 [exp] 72 / 2e-13 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.017G012200 [exp] 61 / 9e-10 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.005G114900 [exp] 56 / 4e-08 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.001G318400 [exp] 50 / 1e-06 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.008G199800 [exp] 48 / 7e-06 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.008G199601 [exp] 44 / 1e-05 AT3G06240 61 / 2e-12 F-box family protein (.1) Potri.010G207401 [exp] 44 / 3e-05 AT3G07870 48 / 4e-07 F-box and associated interaction domains-containing protein (.1) Potri.003G145950 [exp] 45 / 5e-05 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 45 / 9e-05 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 45 / 9e-05 AT3G06240 138 / 5e-37 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007848 pacid=23143604 polypeptide=Lus10007848 locus=Lus10007848.g ID=Lus10007848.BGIv1.0 annot-version=v1.0 ATGGAGACATCGAACTTTCTCAGCTCGCCTCTTGCACTTCTTATCGTCACATTCGTCGTCCTCCTTCCGCCATTGCTGATAGCCTCCTTTCTTCTCCTTA GGTTCATAACGAAGCAGCGGGGCTCAGAGGATTATTCCTATTCCAATTCCAATTCAAATTCCAGGTATGGCGATTTACCCTTTGATATTGTGATCCGAAT CCTGTCTTGCCTCCCTGTAAAATCCTTATTCCGATTCAAGTCCGTATCCAAACTCTGGAACAATATCATCTCCACGGATCCCTACCTTGCCTCTGCGCAC CGCACCAGAAACCACCACCGAAATCACATTATATGCCGTTACCAGCTGAAATCGGAGCTTGATCGAGTTCGAACGGTCTCGATTTCTTCTCCGGACGAAC CGTTCCAACACGACCTCTACTACTCCTCCGTAATTTGCAGCTCGGGGGATCTCGGCTTGTTGCTTCTCCGAAACAATCGTCCATGGTTTTCCTCCTCCTT GGATCAACTCAATTACTCTCTATGGAACCCAGCCACTCGCCAGGTAAACCATCTTCCCCGCCCACCGCCATTTAAACATCCTGATCCGGATTTGAAATTT TTCGATGAAGACTGTGGGGTCGGATTAGATCCGGTTGCCAACTCCGTCAAAGTTGTGCTTGTTCGTCACTATGGTTTGGCCACTGAGTTTAAGTTGTTGT CATCGCCGGTTTATGTGTATACACTAGGAGGAGGAGGTTGGAGGAAGTTAGCTGGCGATTTTCCTTATTCGAACGGTATACCAGGTCCCAAGCTTGTCCG TTCTACGCACTTGCAGGGGTCAATTTACTGGATCGGTACTCATGATAGTTTACCAGATATGGTCACATTTGATCTGGGGACTGATGTTTTCAGTACGATA AGCTTCCGTCCTGTTTACGATCTTTATCAGTATCGTCGCGTAATCAACGGACTGTGCATCTATCGCAATTCGATCGCTGTATTTACTAAGCTGGACTACT TGAGTGTCGACGTATGGCTGCTGAGTAGTAGTGGTGGTGTTGGTGATGGGGAGGAGGGGTTTCGTTGGATCAAACATTCGAGTATCGGACCTCTCGCTCG AGAGCTGGATGTTCACGGATTCTGGAACGACGATAGGCTTCTTGCATCGCCGACGCAGACTTGGAATGATCTCGTTGTTTTCGATATGCTTCAACGAGAA ATCAAAACTGTAATACCTAACGTTCGTAATTTCTTTGAAGTGTTTAGTTACAGAGAGACTCTGGTTTCCCCTTAA
AA sequence Show only first row Show all	>Lus10007848 pacid=23143604 polypeptide=Lus10007848 locus=Lus10007848.g ID=Lus10007848.BGIv1.0 annot-version=v1.0 METSNFLSSPLALLIVTFVVLLPPLLIASFLLLRFITKQRGSEDYSYSNSNSNSRYGDLPFDIVIRILSCLPVKSLFRFKSVSKLWNNIISTDPYLASAH RTRNHHRNHIICRYQLKSELDRVRTVSISSPDEPFQHDLYYSSVICSSGDLGLLLLRNNRPWFSSSLDQLNYSLWNPATRQVNHLPRPPPFKHPDPDLKF FDEDCGVGLDPVANSVKVVLVRHYGLATEFKLLSSPVYVYTLGGGGWRKLAGDFPYSNGIPGPKLVRSTHLQGSIYWIGTHDSLPDMVTFDLGTDVFSTI SFRPVYDLYQYRRVINGLCIYRNSIAVFTKLDYLSVDVWLLSSSGGVGDGEEGFRWIKHSSIGPLARELDVHGFWNDDRLLASPTQTWNDLVVFDMLQRE IKTVIPNVRNFFEVFSYRETLVSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10430			F-box and associated interacti...		Lus10007848 [exp]	0	1
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Lus10034453 [exp]	34.6	0.7233
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10038832 [exp]	50.9	0.7120
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10016793 [exp]	80.7	0.6751
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	98.6	0.6827
AT3G14750			unknown protein		Lus10013698 [exp]	141.8	0.6854

Compare expression of checked genes

Lus10007848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.