Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16780 280 / 8e-94 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT5G47370 265 / 6e-88 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G17460 253 / 1e-83 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT3G60390 249 / 2e-81 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT2G44910 230 / 9e-74 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT5G06710 213 / 4e-67 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 196 / 4e-61 HD HAT22 Homeobox-leucine zipper protein family (.1) AT2G22800 192 / 1e-59 HD HAT9 Homeobox-leucine zipper protein family (.1) AT2G01430 160 / 2e-47 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 134 / 6e-38 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004759 [exp] 490 / 3e-176 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 285 / 3e-95 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 273 / 1e-90 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10021064 [exp] 226 / 4e-73 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 223 / 2e-70 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 211 / 6e-66 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 210 / 3e-65 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10019256 [exp] 158 / 3e-47 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 157 / 2e-46 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079800 [exp] 327 / 4e-112 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.001G155100 [exp] 319 / 3e-109 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.014G045100 [exp] 273 / 4e-91 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.002G136400 [exp] 270 / 1e-89 AT3G60390 285 / 5e-96 homeobox-leucine zipper protein 3 (.1) Potri.016G059000 [exp] 224 / 2e-71 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.006G193700 [exp] 220 / 7e-70 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 220 / 2e-69 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 213 / 7e-69 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.009G023600 [exp] 214 / 6e-67 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.005G147100 [exp] 209 / 4e-66 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF04618 [flax] [poplar] HD-ZIP_N HD-ZIP protein N terminus
Representative CDS sequence Show only first row Show all	>Lus10007849 pacid=23143610 polypeptide=Lus10007849 locus=Lus10007849.g ID=Lus10007849.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAGGAAGGTTTACGCCTCAGCTTGAGCTTGAGCTTCCCCGATCACCGCTCCCCGACGAAGACACAGCAGCTCAACCGCCTCCCTTCCGTTT CCTCATCTTCCTCCGCCGCCGGAAAGCTCTTCGCGGCCGGAGCCAACTCCGCCGCCTTGTCCTGGTTGAAGCACCACAATCACAACCACTCCGCTCTCGA ATTGAATCCTTCCTCCGATCTGGAATCGGAGAGGAGCAACAGCGAGAGCACGAGGTTGTTCCTCCGCGGGATCGACGTCAATCGACTACCAGCGGTTCCC GCCGGAGTCGATTGCGATGAGGAGGCGGGAGTTTCGTCACCGAACAGTACTGTGTCGAGTATAAGTGGGAAAAGGAGCGAGAGAGAAACCGGCGGAGATC AGGATCTCGACGGCGAGAGAGCTTCCTCCCGAGGGATCAGCGATGAGGAAGACGGTAGCGACACTTCGAGGAAGAAGCTCCGCCTCTCAAAAGATCAGTC CGCCGTTCTTGAAGAGAGCTTCAAAGAGCATAGCACTCTCAATCCCAAGCAAAAGCAAGCACTGGCTAAGCAGCTAGGCCTCAGGCCAAGACAAGTGGAG GTGTGGTTCCAGAACAGGAGAGCTAGGACGAAGCTGAAGCAGACTGAAGTGGATTGCGAGTTCCTGAAACGGTGCGCGGAGAATCTGACGGAGGAGAATC GCCGGCTGCAGAAGGAAGTACAAGAGCTGAGAGCACTGAAGCTCTCCCCGCAATTCTACATGCAGATGACTCCACCAACCACGCTCACCATGTGTCCTTC GTGTGAGCGTGTCGCAGTCCCACCACCGTCCTCGTCAGCGTCCACATCGTTGCCGCCACCTGTCAACTCGACAATACAACACCACCGGCCCACGGGTGTT CTCAACCCGTGGGCTGCTGGCGGAGCGTTCAGTGCGCTTCGTCCCCGGTCGTAG
AA sequence Show only first row Show all	>Lus10007849 pacid=23143610 polypeptide=Lus10007849 locus=Lus10007849.g ID=Lus10007849.BGIv1.0 annot-version=v1.0 MAEKEGLRLSLSLSFPDHRSPTKTQQLNRLPSVSSSSSAAGKLFAAGANSAALSWLKHHNHNHSALELNPSSDLESERSNSESTRLFLRGIDVNRLPAVP AGVDCDEEAGVSSPNSTVSSISGKRSERETGGDQDLDGERASSRGISDEEDGSDTSRKKLRLSKDQSAVLEESFKEHSTLNPKQKQALAKQLGLRPRQVE VWFQNRRARTKLKQTEVDCEFLKRCAENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPPSSSASTSLPPPVNSTIQHHRPTGV LNPWAAGGAFSALRPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	0	1
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004759 [exp]	2.0	0.8129
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	2.6	0.8298
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	4.7	0.8212
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	5.9	0.8055
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	6.9	0.7960
AT3G27030			unknown protein		Lus10041550 [exp]	7.3	0.8056
					Lus10010783 [exp]	7.3	0.8201
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	8.4	0.7867
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10024861 [exp]	8.4	0.7385
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	10.5	0.8094

Compare expression of checked genes

Lus10007849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.