Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60410 72 / 1e-14 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT4G17440 59 / 2e-10 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G68340 58 / 6e-10 Protein of unknown function (DUF1639) (.1) AT1G25370 47 / 3e-06 Protein of unknown function (DUF1639) (.1) AT3G03880 41 / 0.0003 Protein of unknown function (DUF1639) (.1) AT1G55340 40 / 0.0007 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004378 [exp] 86 / 3e-19 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10035144 [exp] 54 / 2e-08 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10010312 [exp] 42 / 0.0002 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010650 [exp] 40 / 0.0004 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010984 [exp] 0 / 1 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G136200 [exp] 61 / 6e-11 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.010G122700 [exp] 56 / 6e-09 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.014G044600 [exp] 50 / 9e-08 ND / Potri.008G122600 [exp] 50 / 3e-07 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.014G044700 [exp] 45 / 5e-06 ND / Potri.003G221000 [exp] 43 / 5e-05 AT1G55340 261 / 3e-89 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G004000 [exp] 41 / 0.0003 AT1G55340 268 / 4e-92 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 41 / 0.0005 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G073400 [exp] 41 / 0.0006 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 40 / 0.0007 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10007850 pacid=23143573 polypeptide=Lus10007850 locus=Lus10007850.g ID=Lus10007850.BGIv1.0 annot-version=v1.0 ATGGAGCCAAACCGCCGGCGGGAACACCAACAGCTCTCGTACCGCTCCGCCACCGGAGGCGGAGTCCGATCCAGATGCTGTCGTCAAGCATCTCCGTTCG CCGCCGCCGCAGTCGACGAATGGAAGTCCAGGCGTTGCTCCTCATCCGGTTGGATCAAGGTCCGCTCGGCAGCAGCGGTTTGCCTTCAACTCCTGCTCGA AGGTGTCGACGATCCTCCTCTCCAGGCCGGTGTCCTTGGCGTCGAAGGACAAGCAACAGATGACAGTGCTCGAGAAGGAAGCTACCGGCGGGGGGGGGGG GGGGGGGGGGGCCGGAGAGGAGGAGGATCGGGAGAGGAAGCTGGAGATCCGAAGCCGTGGAAGCTAAGGCCGAGGAGAGGACTCGCTTCTTGCTCGGGAA ACACCCACCATGGCGGCCAGCTCGCCAAGCAATCAAGGGATCTCGCGCGACATACTCCACCTCCGGCGATGAAGTCCAACAGGCCGTCGCGAGGGTCGGC GGAGGCCGGAGCTGAAACCGGATTTCTGACGAGGAAGGAGAAGAGGAAGTTCTGGATCGCTCTGTCAAAGGAAGAGATTGAAGAAGACGTTTACAGTTTG ACCGGTTCAAGGCCAGCTAGGCGTCCCCAGAAACGGCCCAAGAACATCCAGAAATCAGTTGACGTAAGCACATTTCTTCTCCATTCTCCTCCCATTGTTG AGCAATGCTTTTGA
AA sequence Show only first row Show all	>Lus10007850 pacid=23143573 polypeptide=Lus10007850 locus=Lus10007850.g ID=Lus10007850.BGIv1.0 annot-version=v1.0 MEPNRRREHQQLSYRSATGGGVRSRCCRQASPFAAAAVDEWKSRRCSSSGWIKVRSAAAVCLQLLLEGVDDPPLQAGVLGVEGQATDDSAREGSYRRGGG GGGGRRGGGSGEEAGDPKPWKLRPRRGLASCSGNTHHGGQLAKQSRDLARHTPPPAMKSNRPSRGSAEAGAETGFLTRKEKRKFWIALSKEEIEEDVYSL TGSRPARRPQKRPKNIQKSVDVSTFLLHSPPIVEQCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60410			Protein of unknown function (D...		Lus10007850 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	8.5	0.8603
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030222 [exp]	16.6	0.8224
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	18.7	0.8440
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	20.9	0.8336
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	26.1	0.8246
AT3G05980			unknown protein		Lus10002455 [exp]	29.7	0.8131
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	32.5	0.8207
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	37.4	0.8101
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	40.2	0.8206
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	45.7	0.8149

Compare expression of checked genes

Lus10007850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.