Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61650 937 / 0 TUBG1 gamma-tubulin (.1) AT5G05620 929 / 0 TUBG2 ,ATGCP2 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) AT5G44340 273 / 9e-87 TUB4 tubulin beta chain 4 (.1) AT4G20890 270 / 7e-86 TUB9 tubulin beta-9 chain (.1) AT2G29550 268 / 4e-85 TUB7 tubulin beta-7 chain (.1) AT5G23860 268 / 6e-85 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G62700 267 / 1e-84 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 267 / 1e-84 TUB2 tubulin beta chain 2 (.1) AT1G20010 266 / 2e-84 TUB5 tubulin beta-5 chain (.1) AT1G75780 266 / 2e-84 TUB1 tubulin beta-1 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010986 [exp] 891 / 0 AT3G61650 851 / 0.0 gamma-tubulin (.1) Lus10002000 [exp] 276 / 8e-88 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10035497 [exp] 276 / 8e-88 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10008528 [exp] 272 / 2e-86 AT5G12250 837 / 0.0 beta-6 tubulin (.1) Lus10027476 [exp] 271 / 6e-86 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10039231 [exp] 271 / 6e-86 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 269 / 3e-85 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 269 / 3e-85 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10023348 [exp] 267 / 2e-84 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094900 [exp] 932 / 0 AT3G61650 960 / 0.0 gamma-tubulin (.1) Potri.002G167800 [exp] 929 / 0 AT5G05620 958 / 0.0 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) Potri.003G126800 [exp] 272 / 1e-86 AT5G12250 815 / 0.0 beta-6 tubulin (.1) Potri.001G104600 [exp] 271 / 6e-86 AT5G12250 831 / 0.0 beta-6 tubulin (.1) Potri.009G040200 [exp] 270 / 2e-85 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.016G107300 [exp] 269 / 2e-85 AT5G23860 843 / 0.0 tubulin beta 8 (.1.2) Potri.001G464400 [exp] 268 / 4e-85 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.006G095000 [exp] 268 / 4e-85 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.001G106100 [exp] 268 / 5e-85 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.011G162500 [exp] 268 / 6e-85 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0442 [flax] [poplar] Tubulin_C PF03953 [flax] [poplar] Tubulin_C Tubulin C-terminal domain CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10007851 pacid=23143586 polypeptide=Lus10007851 locus=Lus10007851.g ID=Lus10007851.BGIv1.0 annot-version=v1.0 ATGCCGAGAGAAATCATCACTCGGCAAGTTGGGCAATGCGGGAACCAGATTAGCATGGAGTTCTGGAAGCGGCTATGCCTCGAACATGGCATCAGCAAAG ACGGCATTCTCGAGGATTTCGCTACCCAGGGAGGGGACAGGAAAGACGTTTTCTTTTACCAAGCGGACGACCAGCATTACATACCGCGAGCTTTGCTGAT AGATTTGGAGCCGAGGGTGATAAACGGTATCCAGAATGGCGATTACAGGAATCTCTACAACCATGAGAACATCTTTGTTGCTGATCATGGTGGTGGTGCT GGAAACAACTGGGCTAGTGGATACCATCAGGGTCAGGGGGTTGAGGAGGATATAATGGACATGATAGATAGAGAAGCTGATGGAAGTGATAGTCTTGAAG GTTTTGTCCTTTGCCATTCAATTGCTGGAGGAACTGGCTCAGGTATGGGTTCATACCTCCTGGAGACTCTGAACGACCGTTACAGCAAGAAACTGATTCA AACCTACAGTGTATTCCCTAACCAGATGGAGACAAGTGATGTGGTTGTCCAACCTTACAACTCTCTACTAACACTCAAGAGATTGGCGCTTAATGCTGAC TGTGTAGTTGTTCTTGACAACACTGCGCTCAATCGAATTGCAGTGGAGCGCCTCCATTTGTCGAACCCTACTTTTGCTCAGACCAACTCTTTGGTGTCCA CTGTGATGTCTGCGAGCACAACTACGTTGCGGTATCCTGGCTATATGAACAATGACTTGGTCGGGCTTCTTGCTTCTCTGATTCCGACTCCGAGGTGCCA TTTTCTCATGACGGGGTATACACCGCTTACTGTGGAACGACAGGCTAATGTAATCCGGAAAACGACTGTACTTGATGTTATGAGAAGGCTTCTACAGACA AAGAACATAATGGTTTCTTCATATGCAAAGACAAAGGAAGCAAGTCGAGCCAAGTACATCTCGATATTAAACATCATCCAAGGGGAGGTAGACCCTACTC AGGTTCATGAAAGTCTGCAAAGGATTCGTGAACGGAAGCTCGTTAATTTTATCGAATGGGGTCCTGCAAGTATACAGGTTGCTCTGTCAAGGAAGTCTCC ATATGTCCAGACTGCACATAGGGTCAGCGGTCTCATGTTGGCGAGCCATACTAGCATCCGGCATCTCTTTGACAAGGTCATGCACCAATATGACAAGTTG AGAGGGAAGCAAGCCTTTCTAGACAACTATCGTAAATTCCCAATGTTTGCTGACAATGACCTTTCTGAGTTCGATGAATCAAGGGATGTAGTCAAGAGCT TGGCTGATGAATATCAAGCTTGTGAATCTGCAGACTACATCAAGTGGGGAATGGAGGATCCTGACCACCTTATGACCGGTGAAGGAAACGCTTCAGGGTC AGTGGATCCATAA
AA sequence Show only first row Show all	>Lus10007851 pacid=23143586 polypeptide=Lus10007851 locus=Lus10007851.g ID=Lus10007851.BGIv1.0 annot-version=v1.0 MPREIITRQVGQCGNQISMEFWKRLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGA GNNWASGYHQGQGVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLIQTYSVFPNQMETSDVVVQPYNSLLTLKRLALNAD CVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQT KNIMVSSYAKTKEASRAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFDKVMHQYDKL RGKQAFLDNYRKFPMFADNDLSEFDESRDVVKSLADEYQACESADYIKWGMEDPDHLMTGEGNASGSVDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10007851 [exp]	0	1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	6.0	0.9049
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031143 [exp]	7.7	0.8595
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	11.5	0.8574
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10040514 [exp]	18.3	0.8648
AT2G15730			P-loop containing nucleoside t...		Lus10027910 [exp]	21.1	0.7973
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10018675 [exp]	21.5	0.7952
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	22.0	0.8607
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029297 [exp]	25.9	0.8339
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	26.7	0.8558
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	26.9	0.8354

Compare expression of checked genes

Lus10007851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.