Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16990 468 / 2e-166 Zinc-binding dehydrogenase family protein (.1) AT5G16970 459 / 4e-163 AT-AER alkenal reductase (.1) AT5G17000 459 / 8e-163 Zinc-binding dehydrogenase family protein (.1) AT5G16960 458 / 2e-162 Zinc-binding dehydrogenase family protein (.1) AT3G03080 457 / 3e-162 Zinc-binding dehydrogenase family protein (.1) AT5G37980 454 / 9e-161 Zinc-binding dehydrogenase family protein (.1) AT5G37940 450 / 3e-159 Zinc-binding dehydrogenase family protein (.1) AT1G26320 444 / 5e-157 Zinc-binding dehydrogenase family protein (.1.2) AT5G38000 443 / 2e-156 Zinc-binding dehydrogenase family protein (.1) AT3G59845 399 / 2e-139 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010989 [exp] 673 / 0 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 633 / 0 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 580 / 0 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 533 / 0 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 531 / 0 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 497 / 7e-178 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 439 / 5e-155 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 362 / 5e-123 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 328 / 2e-112 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143700 [exp] 485 / 5e-173 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G142400 [exp] 483 / 2e-172 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.007G143800 [exp] 477 / 5e-170 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 468 / 1e-166 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002300 [exp] 462 / 3e-164 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005700 [exp] 461 / 7e-163 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 459 / 7e-163 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.007G143600 [exp] 456 / 9e-162 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G005400 [exp] 453 / 2e-160 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G002950 [exp] 413 / 1e-144 AT5G16970 464 / 7e-165 alkenal reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10007853 pacid=23143571 polypeptide=Lus10007853 locus=Lus10007853.g ID=Lus10007853.BGIv1.0 annot-version=v1.0 ATGGCGCCGGAGCAGAGGAGCAACAACCAAGTAGTGCTGAAGGAGAACGTCCACGGCGGCTACCTCAACGAGTCGCATTTCGCGGTGAAGACCGTTTCCG AGGTGAAGCTCGAAGTTCCGGAAGGTTCGAAGACCGCCATCGTGCTGAAGAACCTTTACCTGTCTTGTGATCCGTACATGCGCGGCAGGATGTCGCCCGG CCAGACCGTCGATCCTGAGTTCGCCGCCTACACCCCTGGCTGCCCAATTTCAGGGTTTGGAGTGAGCAAAGTGGTGGAATCAGGGCACCCAGATTACAAG AAGGGAGACTTGGTATGGGGGTTCACTAACTGGGAAGAGTACAGCATCATTGAGAACCCTAAAGTGCTTTTCAAAATCCCCAATTCAGACGTCCCACTTT CCTACTACACTGGCCTTCTGGGAATGGCTGGAATGACTGCTTATTTTGGATTCTATGACGTCTGCACTCCGAAGAAAGGCGAGTATGTGTTCGTCTCAGC AGCATCTGGCGCGGTTGGCCAGCTGGTGGGGCAGTTCGCTAAGTTGGCTGGTTGCTTCGTTGTTGGAAGTGCTGGAACCAAAGAAAAGGTTCAGCCTTTA GGACTCGTTGATTTGCTGAAGAACAAGTTTGGATTTGATGAGGCTTTCAACTACAAGGAAGAGACTGACTTGGATGCTGCATTAAAGAGGTACTTCCCCG AGGGCATCGACATCTACTTTGAGAACGTCGGAGGGAAGACCCTCGACGCGGTGTTGCTAAACACAAGGCCCCATTGCCGAATCGCAGCGTGCGGGATGAT ATCCCAGTACAACCTGGAGAAGCCCGAAGGAGTCCACAACCTGATGACCATAGTGTACAAGCGCGTCAAGATTCAAGGGTTCATCGTGTTGGACTACTTC CATCGATACACCGAGTTCTTGGGCGTGATGCTGCCTTACATCAAGGAAGGGAAGATCAACTACGTCGAGGACGTAAGCCAAGGGCTCGAGAGCGGGCCCG GTGCTCTAGTGGGGCTCTTTAGCGGCCGCAACGTCGGGAAACAAGTTGTGGCCGTGGCTAAGGAGTGA
AA sequence Show only first row Show all	>Lus10007853 pacid=23143571 polypeptide=Lus10007853 locus=Lus10007853.g ID=Lus10007853.BGIv1.0 annot-version=v1.0 MAPEQRSNNQVVLKENVHGGYLNESHFAVKTVSEVKLEVPEGSKTAIVLKNLYLSCDPYMRGRMSPGQTVDPEFAAYTPGCPISGFGVSKVVESGHPDYK KGDLVWGFTNWEEYSIIENPKVLFKIPNSDVPLSYYTGLLGMAGMTAYFGFYDVCTPKKGEYVFVSAASGAVGQLVGQFAKLAGCFVVGSAGTKEKVQPL GLVDLLKNKFGFDEAFNYKEETDLDAALKRYFPEGIDIYFENVGGKTLDAVLLNTRPHCRIAACGMISQYNLEKPEGVHNLMTIVYKRVKIQGFIVLDYF HRYTEFLGVMLPYIKEGKINYVEDVSQGLESGPGALVGLFSGRNVGKQVVAVAKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	0	1
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	1.7	0.8940
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10004511 [exp]	3.9	0.7658
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034333 [exp]	4.0	0.7647
					Lus10033191 [exp]	4.2	0.8478
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	4.6	0.8459
					Lus10028940 [exp]	6.3	0.8340
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10025975 [exp]	9.2	0.8093
AT3G58060			Cation efflux family protein (...		Lus10029300 [exp]	15.2	0.7481
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	18.8	0.8180
AT2G03370			Glycosyltransferase family 61 ...		Lus10037123 [exp]	21.2	0.7083

Compare expression of checked genes

Lus10007853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.