Plant FIBer expression Database

Lus10007854 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39810 628 / 0 HOS1 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010990
[exp]
995 / 0 AT2G39810 868 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1)
Lus10000423
[exp]
249 / 6e-71 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G079700
[exp]
744 / 0 AT2G39810 928 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1)
Potri.001G155200
[exp]
744 / 0 AT2G39810 961 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1)
PFAM info
Representative CDS sequence
>Lus10007854 pacid=23143593 polypeptide=Lus10007854 locus=Lus10007854.g ID=Lus10007854.BGIv1.0 annot-version=v1.0
ATGGAAAGTAGTCCAATCAGCAGTCGCGTTTCTCCTTCTACTTCTGCCGGCGGCGGCCGCGGCGGCTCTGGCTTCCGTAACGCTGCGCTGTTGAGATCCG
CCGCTTCGAATCTCCAGCCCAACTACAGTAGCCTTGCAGTTCAAAAAGCGTTGGAACATCTGGCATCAATCGATTTGATTGAGCTGTGCAGTGAAGCCAA
AGTAGAGCGCTGTAGGGCGACAAGAGATTTGAGAAGCTGTGGACGCTATGTACAGCATGTCTTAGACTCATGTGGACATGCATCCTTATGTAAAGAGTGT
AGTCAAAGGTGTGACTCCTGCCCAATTTGTAGAATTCCCATCCCCAAGAATGGCAATAGGCTTCGACCTCGCCTTTACTGTGAGTGTATAGAGGCTGGCT
TGATCTCCAAAAGATGTGATGAAAGATTTCAAGAGAAAGAAGACGGCGATGATCAATTGACTGCAGATGTCCTGCGACTCTATGCTTTGTTTGATGTTGC
TATGGAGAATAACCTGGTCTCTTTGATTTGCCACTATAATGCTGGCACAGAAGAAATGGGTAAAAGGATAAGTTTACTTCTTAAGGTTTCAAACCATCTG
GGTGGGATATCCAATGTGCTTGAAGTTCTGGAGTCATCATTTCGGGGTAGCTCTTCCGCGCAGGTCAATGACTTGCAGTTTCTCCATGAAAGTGTTCTGA
AAGCAAAACAGCATGCAGACATTATGGCCTGGTGTATACGCAATGGATTTCTGGAAAATGTGAGGCCCCGATATGGTACTTTAGCCCCATGGCGCTCTGT
TGTCCGAGCACGGAAGGCCGCTGCAGTTAAACGTTCATGGCCAGATGTGGTGAATCAGTCTGCTGGATCAAATATGCAGGCAGGTTCGCTCTTCATTGAG
GATGCCTTATCAAATCTTGAAATAGATCTCGGGCATCCACAGGACATGGAAGCAGAATTCGGGCTTGCATCCTTACAGAAGGATAGCGATTCACTTTTCA
GGTCCAAACTAGAGGGACTGGCAGGATGCTACCCATTTGAAAACCTCCGAGTCGCTGTTGACACGCTCTTCTTAACTGGAAGTTCTGACATGGTTGTTGC
AAAGCAGGCCATTGAAGCTTGTAACCTTCTACCTGAAATCTGTGGAGCATCAACTCATCCAAAGATTGCTCAAGTATTGCTGGAACGAGGCGTTCCTGAA
ACAGCTTTAATGGTGCTTCGGTGGTCTGGACACGATGGGTCACAATTAGTGTCACTTAGCGAAGCTGTTACTGCAGTCCGAGTCAGGGTGGAATGCGGAC
TTCTAACTGAAGCTTTTATGTGTCAGAGAAATTTATGGACCAAAGTTAAGGAGAAGAACTCGAAGGGAGGACAGCCAAAGGACGACTTGAGTGGATGGGG
GGAATGGTTGGAGACTTTGGTGACAGAAATATGCTGTCTTTGTATCAAAAGAAACTTGGTGGATCGGATGATCGAATTGCCCTGGGATTCTGCTGAGGAG
AAGTATCTTTCTAAGTGTCTTCTTGACTGTGCGGTTCACGATCCTTCCTCAACGACTGGAAGTCTTCTTGCAGTATACTATCTTCAGCGATACCGTTACA
CTGAGGCATATGAAGTCGATGCCAAGCTTCAGACCGTGGAGCAAGATTTTATCTCGAAGAATTCGATGAATGAAGCCGTTGTATCTAGAATGAGATCAGC
AAGTCATTGGAGAGCAGCACTTGTTGTAAGTTTGATATTAATGCTTCTGTAA
AA sequence
>Lus10007854 pacid=23143593 polypeptide=Lus10007854 locus=Lus10007854.g ID=Lus10007854.BGIv1.0 annot-version=v1.0
MESSPISSRVSPSTSAGGGRGGSGFRNAALLRSAASNLQPNYSSLAVQKALEHLASIDLIELCSEAKVERCRATRDLRSCGRYVQHVLDSCGHASLCKEC
SQRCDSCPICRIPIPKNGNRLRPRLYCECIEAGLISKRCDERFQEKEDGDDQLTADVLRLYALFDVAMENNLVSLICHYNAGTEEMGKRISLLLKVSNHL
GGISNVLEVLESSFRGSSSAQVNDLQFLHESVLKAKQHADIMAWCIRNGFLENVRPRYGTLAPWRSVVRARKAAAVKRSWPDVVNQSAGSNMQAGSLFIE
DALSNLEIDLGHPQDMEAEFGLASLQKDSDSLFRSKLEGLAGCYPFENLRVAVDTLFLTGSSDMVVAKQAIEACNLLPEICGASTHPKIAQVLLERGVPE
TALMVLRWSGHDGSQLVSLSEAVTAVRVRVECGLLTEAFMCQRNLWTKVKEKNSKGGQPKDDLSGWGEWLETLVTEICCLCIKRNLVDRMIELPWDSAEE
KYLSKCLLDCAVHDPSSTTGSLLAVYYLQRYRYTEAYEVDAKLQTVEQDFISKNSMNEAVVSRMRSASHWRAALVVSLILMLL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G39810 HOS1 HIGH EXPRESSION OF OSMOTICALLY... Lus10007854
[exp]
0 1
AT1G26370 RID1 RNA helicase family protein (.... Lus10037067
[exp]
1.0 0.9147
AT2G28450 C3HZnF zinc finger (CCCH-type) family... Lus10041301
[exp]
7.1 0.8777
AT5G42950 GYF domain-containing protein ... Lus10012078
[exp]
7.7 0.8813
AT4G21710 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-dir... Lus10015446
[exp]
11.5 0.8713
AT3G10650 AtNUP1 unknown protein Lus10043447
[exp]
14.7 0.8648
AT2G48160 Tudor/PWWP/MBT domain-containi... Lus10042690
[exp]
15.0 0.8555
AT3G05680 EMB2016 embryo defective 2016 (.1.2) Lus10021265
[exp]
19.0 0.8682
AT5G66960 Prolyl oligopeptidase family p... Lus10017568
[exp]
21.5 0.8502
AT1G06560 NOL1/NOP2/sun family protein (... Lus10007337
[exp]
21.5 0.8642
AT1G51350 ARM repeat superfamily protein... Lus10002562
[exp]
22.2 0.8470

Lus10007854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.