Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61590 525 / 0 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G15710 105 / 2e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27340 103 / 6e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 89 / 5e-19 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT4G33160 65 / 3e-11 F-box family protein (.1) AT5G49610 58 / 5e-09 F-box family protein (.1) AT5G42360 53 / 2e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42350 53 / 2e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G43190 52 / 3e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G19160 49 / 2e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003029 [exp] 786 / 0 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031955 [exp] 108 / 8e-26 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 107 / 4e-25 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 91 / 1e-19 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 88 / 1e-18 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 82 / 1e-16 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007755 [exp] 72 / 2e-13 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007740 [exp] 67 / 1e-11 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043303 [exp] 55 / 4e-08 AT5G19970 191 / 2e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166500 [exp] 613 / 0 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 583 / 0 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.004G112400 [exp] 107 / 1e-25 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 104 / 2e-24 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 100 / 1e-22 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G074100 [exp] 96 / 3e-21 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G057100 [exp] 89 / 7e-19 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 87 / 1e-18 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G217500 [exp] 85 / 6e-18 AT4G33160 419 / 9e-145 F-box family protein (.1) Potri.014G016200 [exp] 67 / 5e-12 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007855 pacid=23143217 polypeptide=Lus10007855 locus=Lus10007855.g ID=Lus10007855.BGIv1.0 annot-version=v1.0 ATGAAGGGAGAAGCATCATGGATCTATCATTGCACTGATGTTGTGGCTAGAGATGCCAAATCATTCTCTGACATCAATGATGATGATGACGATGAAGACT ATGATGCTAATGCTGTTTCCATGGATCTAATCTTGCCTGACGATTTACTGGAACGGATCTTGGCATATCTCCCCATTGCAAGCATCTTCAGGGCGGGTTC CGTGTCCAAAAGATGGCACGAGATTGTGAGTTCGAGGAGGTTCTTGTGGAACTTCTCGAATGTTGCATCCCAAAAGCCTTGGTACTTCATGTTCACGAGC TCTGACCATCCTGTTGGCTATGCCTTTGATCCCGGTCTTAAGAAGTGGTACGGCATCGATCTGCCTTGCGTAAGGACATCGAATTGGTTCGTCACCTCGT CGTGTGGGTTGGTTTGCTTCATGGACAATGACAGTAGGAGCGAGTTATATGCCTGCAACCCTATTACCAAATGCTACCGAAAGCTCGAAGGCCCTCCCGG TTCGAAACTCTCCGACTACAATGCTCTTGCAGTCTCTGTCAACAGATCGTCGCACAACTATACCGTCTCTGTTGTGAAGTCTAAGCAAGTACCTCAAGAT TTCCTCCAATGGGATTTCTCAATTTATACTTACAGTTCTGCTACCATGGTCTGGAACAATTGCTGGACAGAGGTATTGGTAGGGTGGAGAGGTGGCGATG AAAGTGTTATCTGTAATGGAAATCTATACGTCTTGATTTATTCAACCGGCGGTGCTTATCCTGAAAACCGACACGGCCTTCTAACTTACAAGCTCTCAGG GAGGTATTCTCCCGAAGAGAAGTTGATAAATGGGTTCATTCCAACGCCGTGCCCTCTAACCTGCGGGAGGCTGATGAACTTGAAGGACAAACTGGTCATG GTTGGAGGCATTGGGAAGCATGTGAGGCCTGATGTGATTAAAGGGATCGGAATCTGGGTTCTAAACGGTAGGGAATGGCAGGAGGTTGCTCGAATGCCAC ACAAGCATTTCCAAGGGTTTGGAGAGCTTGATGATGTCTTTGCTAGCAGTGGTACTGATGAGCTTATATACATCCAGAGCTATGGAGGTCCTTCCCTGCT TGTCTTTGACATGAACCAGAAGCAGTGGAAATGGTCGCAGAAGTGCCCCGTTACGAAGAGGTTCCCTCTTCAACTCTTCACTGGTTTCTGTTTCGAACCT AATCTCGAGATCGCACCATGA
AA sequence Show only first row Show all	>Lus10007855 pacid=23143217 polypeptide=Lus10007855 locus=Lus10007855.g ID=Lus10007855.BGIv1.0 annot-version=v1.0 MKGEASWIYHCTDVVARDAKSFSDINDDDDDEDYDANAVSMDLILPDDLLERILAYLPIASIFRAGSVSKRWHEIVSSRRFLWNFSNVASQKPWYFMFTS SDHPVGYAFDPGLKKWYGIDLPCVRTSNWFVTSSCGLVCFMDNDSRSELYACNPITKCYRKLEGPPGSKLSDYNALAVSVNRSSHNYTVSVVKSKQVPQD FLQWDFSIYTYSSATMVWNNCWTEVLVGWRGGDESVICNGNLYVLIYSTGGAYPENRHGLLTYKLSGRYSPEEKLINGFIPTPCPLTCGRLMNLKDKLVM VGGIGKHVRPDVIKGIGIWVLNGREWQEVARMPHKHFQGFGELDDVFASSGTDELIYIQSYGGPSLLVFDMNQKQWKWSQKCPVTKRFPLQLFTGFCFEP NLEIAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Lus10007855 [exp]	0	1
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10004096 [exp]	17.9	0.7521
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	25.3	0.7446
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	30.8	0.7333
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	35.9	0.7208
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041738 [exp]	42.1	0.6696
AT3G26020			Protein phosphatase 2A regulat...		Lus10006440 [exp]	56.6	0.7123
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	56.8	0.7208
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	58.7	0.7061
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	63.5	0.6668
AT1G75590			SAUR-like auxin-responsive pro...		Lus10033161 [exp]	80.6	0.7017

Compare expression of checked genes

Lus10007855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.