Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01460 259 / 3e-82 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1) AT4G01190 255 / 3e-81 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1) AT1G21980 213 / 3e-62 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 214 / 4e-62 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G77740 211 / 4e-61 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 198 / 6e-57 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G60890 193 / 1e-54 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT3G07960 192 / 2e-54 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G41210 190 / 1e-53 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 189 / 5e-53 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003028 [exp] 749 / 0 AT4G01190 262 / 7e-84 phosphatidylinositol phosphate kinase 10 (.1) Lus10014408 [exp] 220 / 4e-64 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 218 / 3e-63 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 217 / 5e-63 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10029661 [exp] 212 / 1e-61 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 207 / 2e-59 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 206 / 5e-59 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10023909 [exp] 204 / 3e-58 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10002734 [exp] 194 / 5e-55 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G093300 [exp] 296 / 2e-97 AT1G01460 256 / 2e-81 Phosphatidylinositol-4-phosphate 5-kinase, core (.1) Potri.006G121200 [exp] 216 / 8e-63 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.005G172800 [exp] 203 / 4e-58 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 202 / 6e-58 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 196 / 5e-56 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.003G196000 [exp] 196 / 2e-55 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.019G015768 [exp] 194 / 3e-55 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 193 / 1e-54 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 192 / 3e-54 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.016G036800 [exp] 191 / 9e-54 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase
Representative CDS sequence Show only first row Show all	>Lus10007856 pacid=23143225 polypeptide=Lus10007856 locus=Lus10007856.g ID=Lus10007856.BGIv1.0 annot-version=v1.0 ATGCAAGCAGCTACACCGCTCTCCCTCCCGTCGACTCCTCCGCAACTCATCCTTCTTCTTCCGATGGCCGCCGGACGACGTAAAAGAATCCCCGCCATTC ACAATTTCCCGCCAAGCGATATGAGACAACACAAAGTACAGTATGCTAAACAGGACAATAAGCGTCTCCCTCGCTTTGGAAATTCTAATGAGTTTGAGCT TAAGGATTATTGCTCCGAAGTTTTTAGACGCATCCAAGATCTGAAAAATGTCGACAACTATGAATATATGCAGTCTGTTTTCACCGATCAGACGTTGAAG GAGATCATTTCCTCTAAGAGAACCGGTTGCTTGGGTCCTTTATCAAGGGATGATCGGTTTTTCATCAAAACCTTGCGCAAATCTGAGGTCAAGGCAATCA TTGAGATGCTTCCAAGTTATTATTTCCATCTTAAGAAGAACCCATCGTCGTTATTAAGCGCACTGTATGGTGTTCATGTTGTGAAGCCAATTGCAGGTGG TAGCAAGGTGTATTTTGGCGTATTGTCAAATGTTATCCCATCAGATGTAAACATGTACAGAATTTATGATCTCAAGGGCTCATCCAGAGGACGCCCTGTT AAAAAGGTTAGAGATCATGTGAATATGATCTCTAAGGACCCAGATTTCGACTTTAGTTTCTATTTGGATCCACGCGTTCACGAAAGACTCCTATCGCAAA TCAAGAGCGACTGTGAGTTCTTGGAGACACAGGGTGTAATGGGTTACAGTCTTTGTCTTGGAGTTCCTCTGAAAAATTCATGTCAAGGTACCATTCATTA TGGTAGCCTACCCTACAAGAAACCAGTCTCAAATTGCTCTTCTCCTACACATTCAATGGATGGGACGTCTTCAATGGTTTCAGCGGACGGTCTAAGTTCC ACAGCTGACACCCTGGAGGACTACGAGCTGAATTTCGTCGATACATACGTGGATATGCAGGACAGTAAGCAAGAAATAAAACTCGGTACGGGGATGTCAG CACGCCCAGTCCATTTGAAATCGGAGCATGAAGGACTACTGGATCCAGGGCACTGCGAGGTGGTGCTCTACTTCGCCATTGTTGACATATTTCGGAACTA CAGCATGGCTAAGCATATCGAGCATGGTTTCAAGTCGATATGGAAAGAGTCCATGTCAGCTGTGAATCCTAAGATCTATTCATCACGCTTTCAGGAATTC CTCTTCCAGATATTTCGAGTACAGCATTCTTGA
AA sequence Show only first row Show all	>Lus10007856 pacid=23143225 polypeptide=Lus10007856 locus=Lus10007856.g ID=Lus10007856.BGIv1.0 annot-version=v1.0 MQAATPLSLPSTPPQLILLLPMAAGRRKRIPAIHNFPPSDMRQHKVQYAKQDNKRLPRFGNSNEFELKDYCSEVFRRIQDLKNVDNYEYMQSVFTDQTLK EIISSKRTGCLGPLSRDDRFFIKTLRKSEVKAIIEMLPSYYFHLKKNPSSLLSALYGVHVVKPIAGGSKVYFGVLSNVIPSDVNMYRIYDLKGSSRGRPV KKVRDHVNMISKDPDFDFSFYLDPRVHERLLSQIKSDCEFLETQGVMGYSLCLGVPLKNSCQGTIHYGSLPYKKPVSNCSSPTHSMDGTSSMVSADGLSS TADTLEDYELNFVDTYVDMQDSKQEIKLGTGMSARPVHLKSEHEGLLDPGHCEVVLYFAIVDIFRNYSMAKHIEHGFKSIWKESMSAVNPKIYSSRFQEF LFQIFRVQHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Lus10007856 [exp]	0	1
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	4.4	0.8151
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Lus10038822 [exp]	8.9	0.7602
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	12.2	0.8014
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	16.5	0.7825
					Lus10016109 [exp]	18.4	0.7984
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	19.1	0.7876
AT3G50780			unknown protein		Lus10016789 [exp]	22.5	0.7460
					Lus10035688 [exp]	23.4	0.7899
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	26.2	0.7777
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	26.7	0.7862

Compare expression of checked genes

Lus10007856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.