Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003027 [exp] 182 / 3e-56 AT5G41620 203 / 5e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166600 [exp] 49 / 7e-08 AT5G41620 345 / 6e-110 unknown protein Potri.014G093400 [exp] 48 / 2e-07 AT5G41620 347 / 8e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007857 pacid=23143197 polypeptide=Lus10007857 locus=Lus10007857.g ID=Lus10007857.BGIv1.0 annot-version=v1.0 ATGTCGATGGAGGGAACGGAGAAAGGCGTCGACTTGGAGAGAAATCGTACGAAGAAGAATAAAGGCAAAAACCAGAACCCAGAACCAGAAGGAGAGTTGG GATACCAAAGAGCTGAGCTTGATGATGAAAACTCGACGACGATACAGAGGAATATAAGGGTATTATTGGTTGGGAAAAGGCAAGGCCCATCTACTCCTTC ACCCAATTGGCGGCTCGGTTTCGATTCAGAAAACCCGGTTCAGGAATTCGCCAACCGTGGCGCCGCCGCCGATTCTGTCTCTCCCAGGCAGCGCTGTGCT GCTCTGTCGTGCCACCCTCTGGGAAATTCAACCCAAACTTGA
AA sequence Show only first row Show all	>Lus10007857 pacid=23143197 polypeptide=Lus10007857 locus=Lus10007857.g ID=Lus10007857.BGIv1.0 annot-version=v1.0 MSMEGTEKGVDLERNRTKKNKGKNQNPEPEGELGYQRAELDDENSTTIQRNIRVLLVGKRQGPSTPSPNWRLGFDSENPVQEFANRGAAADSVSPRQRCA ALSCHPLGNSTQT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007857 [exp]	0	1
AT5G41620			unknown protein		Lus10007858 [exp]	1.0	0.7638
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	17.4	0.7561
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	28.8	0.6924
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031325 [exp]	71.3	0.6737
AT3G14580			Pentatricopeptide repeat (PPR)...		Lus10026191 [exp]	78.2	0.6470
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	83.9	0.6329
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	89.3	0.6279
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	89.9	0.6574
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	124.9	0.6223
AT1G26580			unknown protein		Lus10036888 [exp]	141.8	0.6432

Compare expression of checked genes

Lus10007857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.