Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41620 132 / 4e-34 unknown protein AT1G64180 129 / 4e-33 intracellular protein transport protein USO1-related (.1) AT2G46250 116 / 7e-29 myosin heavy chain-related (.1) AT3G11590 80 / 4e-16 unknown protein AT5G22310 61 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003027 [exp] 513 / 0 AT5G41620 203 / 5e-58 unknown protein Lus10017543 [exp] 138 / 8e-36 AT5G41620 500 / 6e-170 unknown protein Lus10028746 [exp] 135 / 5e-35 AT5G41620 497 / 4e-170 unknown protein Lus10005200 [exp] 88 / 1e-18 AT3G11590 322 / 1e-101 unknown protein Lus10013311 [exp] 86 / 3e-18 AT3G11590 332 / 1e-105 unknown protein Lus10013312 [exp] 86 / 4e-18 AT3G11590 285 / 1e-88 unknown protein Lus10021324 [exp] 71 / 5e-13 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 69 / 2e-12 AT3G11590 587 / 0.0 unknown protein Lus10043111 [exp] 52 / 5e-07 AT1G50660 616 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166600 [exp] 179 / 1e-50 AT5G41620 345 / 6e-110 unknown protein Potri.014G093400 [exp] 173 / 2e-48 AT5G41620 347 / 8e-111 unknown protein Potri.001G096200 [exp] 159 / 1e-43 AT5G41620 523 / 6e-180 unknown protein Potri.003G135000 [exp] 146 / 1e-38 AT5G41620 494 / 1e-167 unknown protein Potri.004G199500 [exp] 97 / 8e-22 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 94 / 9e-21 AT3G11590 560 / 0.0 unknown protein Potri.006G207800 [exp] 81 / 1e-16 AT3G11590 582 / 0.0 unknown protein Potri.009G160900 [exp] 80 / 3e-16 AT3G11590 399 / 9e-132 unknown protein Potri.004G015800 [exp] 43 / 0.0003 AT1G50660 390 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007858 pacid=23143172 polypeptide=Lus10007858 locus=Lus10007858.g ID=Lus10007858.BGIv1.0 annot-version=v1.0 ATGGCTTTTCCTGGCAACCGCCGCCTCAAGAAGCTCGATCAGCCAGCAAATGCAAGTCCACCTGGGATGCTGGAGGACAGATCGCTTAAACAAAACAGAC GTTACATGTCGCATTTTCCAGCAGCTACAACTCCCAGTAGCTCCTCCGAGGTTGCACCTTATAAAGGGAAGCCGAGTCATGGTCTTAAGACGTCGAAGGA GCTACTCAAGGTGCTGAATCGGATATGGAGTCTTGAAGAGCAGCAAGCATCTAACGTGTCAGTGATGAATGCTTTAAGGATGGAACTGGACCATTCCCGG ACACAGATAAAAGGTTTGCTGAAGGAGAAAGAAACTAGTAGGCGAAAAGTCAACACCTTTAAGCACGAGGAGGGACGAATCAAAGCTACCGTCCAGCCTG TCGAAGAAGACGAGAGGAGGTTACGAAGCCGATCAGAGAGCCTGCACAAGAAACTTGCTCAAGAGCTTTCTGAAGTCAAGAGCCGGTTCTCGAATGCTTT AAAAGAGCTCGAAAGGGAAAAGAACGCACGGTTTGTACTGGAGAGTTTGTGCGACGAGTTCGCCATGGGGGTAAAAGATTATGAACAAGAGATTCGAACA ATGAGACCCAAACACGATACAGATGTTGCTAGATTGCAGAAAGAAAACGAATCAAGGAGAGAGTCCTTCCCCTTGAATGAGCTAGCTGGAAGTGGCCCTC GTGGCAGAAATGGCGATCTAGATTCAACAGACAGCGAGCCAGATCATCCCAGCTCCTTGACCAGGCCGATTCTGATCAGAAGCAGCAGCTCGAGGGGAAG CAGAAAGTTTCGGAATGTGTCAAGTCATGTACTTAGTGGACTGATAAGAGACCGTTCCGTGTCATCTGAAGGTGTTGACAGAATTCATCCTGCGGAATGT CAGACTACGAGTAGTCCTGTAAAGAGATGGTCGTCAAAGCTGCCATCTTTGGACTCTGAGGGAAGCACCCTTAAAGAGAAACTGCTGGAAGCAAGACTGG AAGGCCAGAAATTGCGATCGAAACCCTCGAAAGTTTCATCCTTGTTAGATTGA
AA sequence Show only first row Show all	>Lus10007858 pacid=23143172 polypeptide=Lus10007858 locus=Lus10007858.g ID=Lus10007858.BGIv1.0 annot-version=v1.0 MAFPGNRRLKKLDQPANASPPGMLEDRSLKQNRRYMSHFPAATTPSSSSEVAPYKGKPSHGLKTSKELLKVLNRIWSLEEQQASNVSVMNALRMELDHSR TQIKGLLKEKETSRRKVNTFKHEEGRIKATVQPVEEDERRLRSRSESLHKKLAQELSEVKSRFSNALKELEREKNARFVLESLCDEFAMGVKDYEQEIRT MRPKHDTDVARLQKENESRRESFPLNELAGSGPRGRNGDLDSTDSEPDHPSSLTRPILIRSSSSRGSRKFRNVSSHVLSGLIRDRSVSSEGVDRIHPAEC QTTSSPVKRWSSKLPSLDSEGSTLKEKLLEARLEGQKLRSKPSKVSSLLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41620			unknown protein		Lus10007858 [exp]	0	1
					Lus10007857 [exp]	1.0	0.7638
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	19.7	0.6239
AT5G10530			Concanavalin A-like lectin pro...		Lus10016833 [exp]	25.1	0.6872
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	25.3	0.6513
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10043430 [exp]	68.8	0.6404
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	112.1	0.6121
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	225.3	0.5695

Compare expression of checked genes

Lus10007858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.