Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01140 53 / 8e-08 Protein of unknown function (DUF1191) (.1) AT4G23720 45 / 3e-05 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003033 [exp] 261 / 4e-86 AT4G01140 89 / 6e-20 Protein of unknown function (DUF1191) (.1) Lus10028743 [exp] 60 / 7e-10 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 59 / 8e-10 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094000 [exp] 106 / 8e-27 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 104 / 5e-26 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 55 / 2e-08 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 54 / 4e-08 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 47 / 5e-06 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 44 / 7e-05 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10007859 pacid=23143170 polypeptide=Lus10007859 locus=Lus10007859.g ID=Lus10007859.BGIv1.0 annot-version=v1.0 ATGCCTCCATTCAACGTCACGATCGTCATCCTCGTCATCCTCCTCCGCAAAATCCCACCCGTCCAAGCCTCCTCATCCTCATCATCATCTCCGTCGTTCG ATTTCAAGCCCCTGGAGTCCCTAATCCGATCAGGCGCAATGACAGCGTTAATCTCCCAACCAACCGGAATCATCGCCGACGTTCCTCTACCGTCGAACTA CTCCACCGTCTCCGCCTCCGTCATCCGCCTCCGCACCCGCCGATTCCACGACCTCGGAACCGCCGCCAGCACATTATTCGTCTTCCCTCCCGGGATCATT CCTTACCCTTTCCCGCCGCGGATCGCGATCGTGTTCTTCAATTTGGGCGCGGAGCTATCTCCGAGATACTTCCACGTCCCGGGATACTCATTACTCGCTC CGGTAATCGGCTTCTCCGCCTTCGACGCCGCCGCGAATTTCTCGGATCCGGCGGTGGAGAGCCTGCAATTCACCTTCTCGTCCGCCGCCGTGGGATCGAT ACTGGCCAGGATCCCACGGCAGTCCCCGGCGCCGGGGGCAGGGGAGGGGATGGAGTGGGTGGAGTTCGTCGGGGGGTTCGTCGGGGGGCAAGGGTTGGTT CAGCTGAGGAACGTGACGGGGGATTTTATATGTGAGACGGAAGGGAGCGGGAAGTGTGCGGTGGTGGTGCCGGTGAGGGAGGAGACGGAGGAGGAGAAGG CGGAGGTGATTAGGAAGGTGATCGTGGCGGCGGCGGGTGCGTTGGGTGCGATATGCTTGTTGGTGATATGTGTAACGAGTTATAAGATGGTGAGGAGTCA TCGGATTGAGAAGATGGTCGGAGAAGCGGAGAATGGGTTGGCGTTCGATACGACGTGGATTGGCCGGAGCAAAATGCCGTCGGCTTCCATGGTTAGGACT CAACCCAGCATTGAACATGGTTATGCCCCTTAA
AA sequence Show only first row Show all	>Lus10007859 pacid=23143170 polypeptide=Lus10007859 locus=Lus10007859.g ID=Lus10007859.BGIv1.0 annot-version=v1.0 MPPFNVTIVILVILLRKIPPVQASSSSSSSPSFDFKPLESLIRSGAMTALISQPTGIIADVPLPSNYSTVSASVIRLRTRRFHDLGTAASTLFVFPPGII PYPFPPRIAIVFFNLGAELSPRYFHVPGYSLLAPVIGFSAFDAAANFSDPAVESLQFTFSSAAVGSILARIPRQSPAPGAGEGMEWVEFVGGFVGGQGLV QLRNVTGDFICETEGSGKCAVVVPVREETEEEKAEVIRKVIVAAAGALGAICLLVICVTSYKMVRSHRIEKMVGEAENGLAFDTTWIGRSKMPSASMVRT QPSIEHGYAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01140			Protein of unknown function (D...		Lus10007859 [exp]	0	1
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001711 [exp]	2.8	0.8165
					Lus10002646 [exp]	4.9	0.7735
AT1G67050			unknown protein		Lus10009160 [exp]	5.5	0.8214
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006172 [exp]	7.1	0.7963
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	8.0	0.8344
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	8.1	0.8181
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10017417 [exp]	8.4	0.8129
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	13.6	0.8058
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041052 [exp]	16.7	0.7990
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	17.3	0.7927

Compare expression of checked genes

Lus10007859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.