Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01560 447 / 3e-158 MEE49 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) AT1G63780 150 / 9e-43 IMP4 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030171 [exp] 603 / 0 AT4G01560 508 / 0.0 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) Lus10035745 [exp] 137 / 2e-37 AT1G63780 468 / 2e-168 Ribosomal RNA processing Brix domain protein (.1) Lus10037326 [exp] 131 / 2e-35 AT1G63780 463 / 3e-166 Ribosomal RNA processing Brix domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182600 [exp] 486 / 5e-173 AT4G01560 481 / 2e-171 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) Potri.014G108400 [exp] 469 / 4e-166 AT4G01560 475 / 4e-169 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) Potri.003G201100 [exp] 142 / 1e-39 AT1G63780 488 / 2e-176 Ribosomal RNA processing Brix domain protein (.1) Potri.001G024500 [exp] 142 / 2e-39 AT1G63780 485 / 3e-175 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10007860 pacid=23143169 polypeptide=Lus10007860 locus=Lus10007860.g ID=Lus10007860.BGIv1.0 annot-version=v1.0 ATGGGGGCAAAGAGAAAGCAGAGCGAAAGCTCCACACTAGTTGATCAGAATGATGGAGACGGCGAACGCGGTGGAAGTAGTAGGGACAAGAGGAACAAGC CAACCATGGAGAAGAAGGACGAGCTTCGTCCTTCCATGATAAAGAACAAGGAGAAGAGATCCGCCCTCCACAATAAGCTCAAGCAACAGAAGAAACTCGA CAAACGTAAGGCCAAGAAGGCTCGCGTGGCTGCCGACAAGCAGGCCATCGAGCTCGGCGAGGAGCCTCCTGCGAGGAAAGTTCCTCGCACCATTGAGAAT ACCAGAGAAGGTGATGAAACTGTTTGCAAACCTGATGATGCTGAGCTATTTGTGGCTAATGATGCTGATGAATTTAGTTCAATTCTAAGACGGGAAAAGA CTCCTAAGATATTGATAACCACTTGCCGCTTCCATTCTACGTCCATTATCATGCCTGCATTCTTTGTCCAGAGAGGTCCAGCTTTTATAGAAGAGCTACT TTCTGTAATTCCAAATGCTCATTATTACAAGAGAGGAACTTATGACTTAAAGAAGATTATGGAATATGGTACAAAGATGGACTTCACCTCAGTTATCGTT GTTCACACAAGCCGCAGGGAACCAGATGCTCTGTTGATCACTTCTTTGCCATCTGGACCCACCGCCCATTTTAAGCTCTCAAAGCTTGTTCTGCGGAAGG ATATTAAGGGTCACGGAAATCCCACTGGACACATACCTGAACTGGTTCTGAATAACTTCACAACCCGCCTTGGTCATCGTGTGGGAAGGATGATACAGTC ACTTTTCCCTCAGAATCCAAATTTCCGTGGCCGTCGTGTCGCAACCTTCCACAATCAGCGTGATTTTATTTTCTTCCGACATCACCGGTACATCTTCGAA GAAAAGGAAAACAAACAGAAGGATTCGAAAAGTAGCAAAGGGAAGGATGCCAAGGATAGTAAGGCCGCTTCTCGACAAGTAACTGCCCGTCTTCAGGAAT GTGGCCCTCGATTTACCCTGAAGCTGAAGAGCCTACAACACGGAACATTCGACACTAAGGGCGGAGAGTACGAATGGGTTCACAAGGCGGAAATGGACAC CAGCCGGAGAAGGTTCTTCCTCTGA
AA sequence Show only first row Show all	>Lus10007860 pacid=23143169 polypeptide=Lus10007860 locus=Lus10007860.g ID=Lus10007860.BGIv1.0 annot-version=v1.0 MGAKRKQSESSTLVDQNDGDGERGGSSRDKRNKPTMEKKDELRPSMIKNKEKRSALHNKLKQQKKLDKRKAKKARVAADKQAIELGEEPPARKVPRTIEN TREGDETVCKPDDAELFVANDADEFSSILRREKTPKILITTCRFHSTSIIMPAFFVQRGPAFIEELLSVIPNAHYYKRGTYDLKKIMEYGTKMDFTSVIV VHTSRREPDALLITSLPSGPTAHFKLSKLVLRKDIKGHGNPTGHIPELVLNNFTTRLGHRVGRMIQSLFPQNPNFRGRRVATFHNQRDFIFFRHHRYIFE EKENKQKDSKSSKGKDAKDSKAASRQVTARLQECGPRFTLKLKSLQHGTFDTKGGEYEWVHKAEMDTSRRRFFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10007860 [exp]	0	1
AT2G25970			KH domain-containing protein (...		Lus10020998 [exp]	1.7	0.8894
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	5.1	0.8804
AT2G40070			unknown protein		Lus10027767 [exp]	5.3	0.8711
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10012141 [exp]	6.6	0.8312
AT1G02870			unknown protein		Lus10001459 [exp]	7.1	0.8560
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10003290 [exp]	10.5	0.8703
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	12.0	0.8750
AT1G02870			unknown protein		Lus10002436 [exp]	16.1	0.8333
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031786 [exp]	20.6	0.8689
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	22.6	0.8385

Compare expression of checked genes

Lus10007860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.