Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35035 379 / 9e-133 URED urease accessory protein D (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030170 [exp] 420 / 6e-149 AT2G35035 308 / 2e-105 urease accessory protein D (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159600 [exp] 406 / 3e-143 AT2G35035 406 / 6e-144 urease accessory protein D (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01774 [flax] [poplar] UreD UreD urease accessory protein
Representative CDS sequence Show only first row Show all	>Lus10007861 pacid=23143179 polypeptide=Lus10007861 locus=Lus10007861.g ID=Lus10007861.BGIv1.0 annot-version=v1.0 ATGACCAAAACAGGGAACGTGACGGTGGAAAGAGTCGGAGAGAAATCAACAGTGATAAGATGCTTCTCAAAGTATCCTCTCAAATTCATCCTTCCTAATA AGGTGGGCGCGTCAGCAGTTGATGCCGCATGGATTTACACACTCACCTACGGCGGCGGTATTGTTTCTGGTGACCGTATATCGTGTGAATTTAATATTGG CAATGGCTGCACTGCTGTGTTAACAACTCAAGCATCCACGAAGGTTTACAAGTCTCTGGGGTCTAGATGTTCTGAGCAGTTCCTGGAGGCAAGGATTGGG AGTGACGCCCTTTTGGTTGTAATTCCTGATCCGGTCACCTGTTTCGCTACCGCGAGATATGCTCAGAAACAAGTGTTCAGAGTCGTTGCGGGGTCTAGCT TAGTACTTGTGGATTGGATTACGAGTGGGCGACATGAGAGTGGGGAGAAGTGGGAATTTGATCTGTATAAGAGCACTAACCAGATATTCGTTGCGGATGA TGACGATATTGATGATGATGATGATGGCAGGCCCTTGTTCATTGACACTGTATTGCTAGAAAAAGGAAGCATCTCAAGTGTTGAAGAGTGCATGCTGGAT TACCAAGTGATTGCAATGGTGGTACTTTTAGGGCCTAAGTTGGAGAACATTAAAAACCAAATCCAAGAGAATGTAGGAAGGTTGATGTCTGAGCAATTGC ACAAGCCTTTCTATGGCCATGCTAAACCGAATTCCAGTATCAGCGGTAACGAATTCAACAAACCACCATTCATTGCTTCTTGCAGCCCGTTCGGTCCCAA GTCCAATGAAGTAATTCTCAAGCAATTGCAAAAAGTGCAGGGTGTGGGAGTTGTAGTGAGAATAGCAGCCACCACAACTGAATCTGTGTACAAATTTCTG AACCAACAACTCAGTGGATTGGAGTCGCTCATCGGCGTTCCACCGTATCGCTGA
AA sequence Show only first row Show all	>Lus10007861 pacid=23143179 polypeptide=Lus10007861 locus=Lus10007861.g ID=Lus10007861.BGIv1.0 annot-version=v1.0 MTKTGNVTVERVGEKSTVIRCFSKYPLKFILPNKVGASAVDAAWIYTLTYGGGIVSGDRISCEFNIGNGCTAVLTTQASTKVYKSLGSRCSEQFLEARIG SDALLVVIPDPVTCFATARYAQKQVFRVVAGSSLVLVDWITSGRHESGEKWEFDLYKSTNQIFVADDDDIDDDDDGRPLFIDTVLLEKGSISSVEECMLD YQVIAMVVLLGPKLENIKNQIQENVGRLMSEQLHKPFYGHAKPNSSISGNEFNKPPFIASCSPFGPKSNEVILKQLQKVQGVGVVVRIAATTTESVYKFL NQQLSGLESLIGVPPYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35035		URED	urease accessory protein D (.1...		Lus10007861 [exp]	0	1
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	7.2	0.8554
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10007322 [exp]	11.4	0.7817
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	13.4	0.8180
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	15.9	0.8339
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	17.9	0.8183
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10012349 [exp]	31.6	0.7723
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10030543 [exp]	32.5	0.7904
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038671 [exp]	34.6	0.7227
AT5G05360			unknown protein		Lus10012213 [exp]	41.5	0.7973
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10037009 [exp]	45.6	0.7210

Compare expression of checked genes

Lus10007861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.