Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30340 348 / 1e-118 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 311 / 2e-104 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G01070 259 / 1e-83 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G01450 253 / 1e-81 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT4G01430 249 / 5e-80 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G11460 240 / 8e-77 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 231 / 2e-72 WAT1 Walls Are Thin 1 (.1.2) AT1G11450 212 / 2e-66 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 212 / 2e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 209 / 2e-64 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030168 [exp] 682 / 0 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030169 [exp] 308 / 9e-105 AT3G30340 211 / 5e-67 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 221 / 3e-68 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 216 / 5e-67 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 216 / 2e-66 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10031437 [exp] 206 / 7e-63 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 203 / 1e-61 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10001523 [exp] 202 / 2e-61 AT1G09380 446 / 6e-157 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 202 / 2e-61 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182700 [exp] 412 / 7e-144 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.014G108500 [exp] 402 / 6e-140 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 380 / 1e-131 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 377 / 6e-130 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G108600 [exp] 230 / 2e-72 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 228 / 2e-71 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G006600 [exp] 219 / 3e-68 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 218 / 9e-68 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 217 / 2e-67 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G051500 [exp] 211 / 8e-65 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10007862 pacid=23143222 polypeptide=Lus10007862 locus=Lus10007862.g ID=Lus10007862.BGIv1.0 annot-version=v1.0 ATGGCTTTTGCAGATGAATGGAAGATTATAGCTACGATGATACTCGTTAACTTTGGCTTTGCTTTGGTGAATGTGCTCTTCAAAAAGGCTCTTGATGAAG GAACCAATGAGATGGTTATTGTTGCTTATAGGATGGCAGTCTCCACCATTTTCTTGACTCCAATTGCCTACTACCGGGAAAGGAAAAGCAGAACCAAGCT CACTGGAACTATATTATGCAATCTTTTCGTTGGAGCTCTCACCGGGCTTACCCTCTTTCAATACCTGTTCCTTCTGGGACTAAAGCACACATCTGCTGCC TTCTCATGTGCATTTCTCAACACTGTGCCTGTCTTTACATTCCTACTAGCAATACCATTCGCACTCGAAAAAGTGAACCTGGGGAGCAAGAGTGGAAGAG CCAAAGTGTTAGGAGCAGTGATATGCATGAGTGGAGCCATTCTACTAACCGTCTACAAAGGAACTCCTCTAACCAACTCCCATAGCGGCACATTCCTTTC CAACTCTCCAGTTTCCGAGGAGAAAACAAGGAAATGGGTCTTAGGTTCCATACTTCTCATCGGAGGCTGTCTTGCTTGGTCATCTTGGTTTCTCATACAG GCGCAAGTTCTGAAGAGATACCCATGTCCCTACTCTAGCACCGCAATCATCGCATTCTTTGCTTCGGTCCAGACGGCAGTCCTGAGTTTGATCATCAAGA GAGACGCTTCCATGTGGATCCTCAAGGGGAAGTGGGAAATTCTCACAGTCGTATACACTGGAGTGGTGGGATCGGGTATATGCTACGTGGGAATTTCGTG GTGCGTCAAGCGAAAAGGTCCGGTGTTCACAGCTGCATTCACTCCCTTCACGCAGATATTTGCAGCCGTGTTCGACTTCTCTTTCTTGCATGAACAACTC TTTCTTGGAAGTATAATCGGATCGGTCTTCGTGATTCTTGGTCTGTACATTCTTCTGTGGGGGAAGAGCAAGGAGGCAGATGAGAAATGTGTGATGATGA AGCAGCAAATCGAAGGTGTTGTTATGAAGGAAGTTGTTGAAGTTCATGATAACGACCCTGAAGTTCAAGTTGTGAAACCAGCTACTGCTCAAAACGACAC ACACTAG
AA sequence Show only first row Show all	>Lus10007862 pacid=23143222 polypeptide=Lus10007862 locus=Lus10007862.g ID=Lus10007862.BGIv1.0 annot-version=v1.0 MAFADEWKIIATMILVNFGFALVNVLFKKALDEGTNEMVIVAYRMAVSTIFLTPIAYYRERKSRTKLTGTILCNLFVGALTGLTLFQYLFLLGLKHTSAA FSCAFLNTVPVFTFLLAIPFALEKVNLGSKSGRAKVLGAVICMSGAILLTVYKGTPLTNSHSGTFLSNSPVSEEKTRKWVLGSILLIGGCLAWSSWFLIQ AQVLKRYPCPYSSTAIIAFFASVQTAVLSLIIKRDASMWILKGKWEILTVVYTGVVGSGICYVGISWCVKRKGPVFTAAFTPFTQIFAAVFDFSFLHEQL FLGSIIGSVFVILGLYILLWGKSKEADEKCVMMKQQIEGVVMKEVVEVHDNDPEVQVVKPATAQNDTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	0	1
AT1G77810			Galactosyltransferase family p...		Lus10006933 [exp]	2.4	0.8634
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	3.7	0.8883
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10021887 [exp]	4.0	0.8669
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	4.1	0.8984
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032019 [exp]	6.7	0.8448
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	10.1	0.8878
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10014706 [exp]	10.6	0.8593
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	11.3	0.8591
AT1G49330			hydroxyproline-rich glycoprote...		Lus10015036 [exp]	15.1	0.8109
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	15.2	0.8657

Compare expression of checked genes

Lus10007862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.