Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01570 888 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 214 / 2e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 186 / 1e-48 PGR3 proton gradient regulation 3 (.1) AT1G63330 179 / 6e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 178 / 2e-47 RPF2 rna processing factor 2 (.1) AT1G63080 178 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 177 / 8e-47 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G22470 175 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 172 / 1e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 172 / 2e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030167 [exp] 1534 / 0 AT4G01570 886 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 216 / 6e-59 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 207 / 7e-56 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10019524 [exp] 189 / 4e-50 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 185 / 1e-48 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 177 / 2e-46 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 173 / 3e-45 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027974 [exp] 174 / 6e-45 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 173 / 2e-44 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182900 [exp] 1043 / 0 AT4G01570 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G183100 [exp] 1041 / 0 AT4G01570 1023 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 219 / 3e-60 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 214 / 4e-58 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G046000 [exp] 202 / 4e-55 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 193 / 3e-51 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 189 / 6e-50 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 184 / 7e-49 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 186 / 8e-49 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 181 / 5e-48 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007863 pacid=23143224 polypeptide=Lus10007863 locus=Lus10007863.g ID=Lus10007863.BGIv1.0 annot-version=v1.0 ATGGAAAAGCTGAGGCGAGCATCAGCTTCCGCCGCCAAACCTGGTGGTCCACTGAAACAAATGGGCGACCTCCTGCTCGTCGCCTTCCTAACGAAAACCC TATCGGAATCCGGAACCCGAAACCTCGACCCGGAGACGCTCCCTCCCTTGTCGGAGCATCTGGTGATTCAAATCCTAAGGAGGACCCGCCTCGACGTCTC GAGGAAGACCGATTTCTTCAAGTGGTGCTCTCTCAGGCATAACTACAAACACTCGGCTTGCACTTACTCCCAGATGTTCGGCGCCCTCTGCCGCGCCGAA TACCTCGAGGACGTTCCCGATTTGCTCCGACTCATGAAGTCTGACGCCGTACTAGTCGGCCCGGAGACTTTCAAGATGCTCCTCGACTCGCTGATCCGGC TAGGCAAGCTGGATTACGCTATCCAAATACTCGACTACATGGAAGAACTCGAAGCCAAACTCAGCCCAATGATATACGACAGCGTCATAGCCGCGCTCGC CAAGAAGAACCAGGTCGATTTGGCGCTTAACATTTTCTTCAAGCTGCTGGATGATCCAAATCCCGCCAGTACTCCACCTGGTTCTGCGGCCTGCAATTCC TTACTGGTCGCTCTGAAAAAGGCAGACAAGGAGGAAGAGTTCAAAAAGGTATTTCACAAACTAAGGCAAACTAATGGATTTGAATTGGATACATATGGTT ACAACATCTGCATACACGGATTCGGAATGTGGGGAGATTTGCCAACTTCTTTGAATCTCTTCAGAGAAATGCAGGACAAGGATTTGTGCACATACAACAG CTTGATTCAGTCGTTGTGCTTGGCTGGTAAAGTGAAGGATGCACTGATCGTATACGAAGAACTGAAGGCGTCGGGGCATCGTCCCGACGCCTTCACTTAC CGGATACTAATCCAAGGCTGCTCGAAATCAAGCCAGATCAACGAGGCGACTCGCCTTTTCAGCGAAATGCAGTATGAAGGATTCGTAGCTGAATCCATAG TGTACAACTCTCTTCTCGACGGGATGTTCAAGGCGAACAGAGTCGTAGAAGCATGCCAGCTGTTCGAAAAGATGGTGGACGACGATGGAGTGAGAGCTAC GCCATGGACATACAATATTCTGATCCACGGGCTGTTCCGGAACGGAAGAGGCGAAGCTGGTTATAACTTATTCATTGACCTGAAGAAAAAGGGGCAGCTG GTTGATGGGGTTACTTACAGCATTGTGGTGTTGCAGCTTGTTAAGGAAGGCGAGCTCGAAGAAGCGCTTCGGTTAGTGGAAGAGATGGAGGATAAAGGAA TCGCCGTTGATCTGGTTACAATAACTTCGTTGCTGATCGGATTGTACAGACAAGAGAGATGGGATTGGACTGAACGGCTGATGAAGCATGTAAGAGACGG TAATTTAGTACCGAGTGTGATTAAATGGAAGGCGGAAATGGATGCCGAAGTGAAGAACAGGAAGTACAGAGTCAAAGAGGATGGCTCACCGTTGTTCCCT TACAAAGGCGGCATCGAGGAGTTCTTAAGTGCTGAATCGAAAGTTCATCGAACAAGTTCGACGAACAATGATCAGTGGTCGACGTCTCCTCATATGGATT GTTTGGCGGAGGAAGCGAAAGCGGGGGAGTTCACTTCGCAGCTCTTTTCGCTGGCTAGAGGACAGAGAGTAGAGAGGGATTTCGATTTCGACGTTGCGAT GGTGAATACTTTCATGTCGATCTTCCTGGCGAAAGGGGAGCTGAGTGTGGCATGCAAGCTGTTCGAGGTATTCAGCAATGCCGGAACGAAGAACCCTGCA AGCTACACGTACAATGCTGTGATGAGTTCGTTCGTGAAGAAGGGATACTTCGACGAGGCGTGGAACGTACTGAATGAGATGAAGCTTTGTAGTCCTGCGG ATATAGCAACGTACAATGTCATAATCCAAGGGTTAGGGAAAATGGGGAGAGCGGATATTGCTAGCTATGTTCTTGATAAGTTGATGGATCACGGTGGATG CCTTGACATAGTTATGTACAACACATTGATCAATGCGCTGGGAAAGGCTGGCCGGATCGAGGAAGCCAACAGGCTTTTCGAGCAGATGAAATGCAGCGGG ATAAATCCTGATGTTGTTACTTACAACACTCTGATCGAAGTTCATACCAGGGCTGGTAGATTGAAAGAAGCTCACAAGCTGCTGAAGATGATGCTTGATG CTGGATGCTTGCCGGATAGCATTACTGACACGATTCTGGACGTCTTGGCTAGAGAAATCGAGAAAGTTCGATACCAGAAGGCCTCGATCATTAGCCAGAA CAATGATTCTCCTCCCTCTACCTCTTCCTGA
AA sequence Show only first row Show all	>Lus10007863 pacid=23143224 polypeptide=Lus10007863 locus=Lus10007863.g ID=Lus10007863.BGIv1.0 annot-version=v1.0 MEKLRRASASAAKPGGPLKQMGDLLLVAFLTKTLSESGTRNLDPETLPPLSEHLVIQILRRTRLDVSRKTDFFKWCSLRHNYKHSACTYSQMFGALCRAE YLEDVPDLLRLMKSDAVLVGPETFKMLLDSLIRLGKLDYAIQILDYMEELEAKLSPMIYDSVIAALAKKNQVDLALNIFFKLLDDPNPASTPPGSAACNS LLVALKKADKEEEFKKVFHKLRQTNGFELDTYGYNICIHGFGMWGDLPTSLNLFREMQDKDLCTYNSLIQSLCLAGKVKDALIVYEELKASGHRPDAFTY RILIQGCSKSSQINEATRLFSEMQYEGFVAESIVYNSLLDGMFKANRVVEACQLFEKMVDDDGVRATPWTYNILIHGLFRNGRGEAGYNLFIDLKKKGQL VDGVTYSIVVLQLVKEGELEEALRLVEEMEDKGIAVDLVTITSLLIGLYRQERWDWTERLMKHVRDGNLVPSVIKWKAEMDAEVKNRKYRVKEDGSPLFP YKGGIEEFLSAESKVHRTSSTNNDQWSTSPHMDCLAEEAKAGEFTSQLFSLARGQRVERDFDFDVAMVNTFMSIFLAKGELSVACKLFEVFSNAGTKNPA SYTYNAVMSSFVKKGYFDEAWNVLNEMKLCSPADIATYNVIIQGLGKMGRADIASYVLDKLMDHGGCLDIVMYNTLINALGKAGRIEEANRLFEQMKCSG INPDVVTYNTLIEVHTRAGRLKEAHKLLKMMLDAGCLPDSITDTILDVLAREIEKVRYQKASIISQNNDSPPSTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10007863 [exp]	0	1
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10030167 [exp]	1.0	0.8892
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10030576 [exp]	8.8	0.8662
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	10.6	0.8730
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10000879 [exp]	10.8	0.8335
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10003660 [exp]	11.2	0.7705
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	13.7	0.8144
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	14.4	0.8648
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022306 [exp]	18.2	0.8445
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	19.1	0.8597
AT5G22090			Protein of unknown function (D...		Lus10004098 [exp]	19.2	0.8175

Compare expression of checked genes

Lus10007863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.