Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01575 89 / 2e-23 serine protease inhibitor, Kazal-type family protein (.1) AT3G61980 87 / 4e-23 serine protease inhibitor, Kazal-type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030166 [exp] 179 / 6e-59 AT4G01575 134 / 2e-41 serine protease inhibitor, Kazal-type family protein (.1) Lus10010285 [exp] 65 / 2e-14 AT3G61980 66 / 3e-15 serine protease inhibitor, Kazal-type family protein (.1) Lus10010287 [exp] 64 / 4e-14 AT4G01575 72 / 2e-17 serine protease inhibitor, Kazal-type family protein (.1) Lus10010094 [exp] 61 / 6e-13 AT4G01575 61 / 5e-13 serine protease inhibitor, Kazal-type family protein (.1) Lus10009866 [exp] 61 / 1e-12 AT4G01575 70 / 1e-16 serine protease inhibitor, Kazal-type family protein (.1) Lus10010286 [exp] 54 / 1e-10 AT4G01575 63 / 3e-14 serine protease inhibitor, Kazal-type family protein (.1) Lus10030164 [exp] 53 / 4e-10 AT4G01575 59 / 8e-13 serine protease inhibitor, Kazal-type family protein (.1) Lus10009865 [exp] 48 / 5e-08 AT4G01575 56 / 3e-11 serine protease inhibitor, Kazal-type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G108600 [exp] 112 / 1e-32 AT4G01575 104 / 1e-29 serine protease inhibitor, Kazal-type family protein (.1) Potri.002G182800 [exp] 98 / 6e-27 AT4G01575 103 / 4e-29 serine protease inhibitor, Kazal-type family protein (.1) Potri.015G001800 [exp] 82 / 8e-21 AT4G01575 83 / 4e-21 serine protease inhibitor, Kazal-type family protein (.1) Potri.014G109000 [exp] 67 / 2e-15 AT3G61980 69 / 1e-16 serine protease inhibitor, Kazal-type family protein (.1) Potri.014G108900 [exp] 66 / 4e-15 AT3G61980 67 / 5e-16 serine protease inhibitor, Kazal-type family protein (.1) Potri.014G108700 [exp] 64 / 2e-14 AT3G61980 76 / 2e-19 serine protease inhibitor, Kazal-type family protein (.1) Potri.014G108800 [exp] 52 / 9e-10 AT4G01575 57 / 7e-12 serine protease inhibitor, Kazal-type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007864 pacid=23143173 polypeptide=Lus10007864 locus=Lus10007864.g ID=Lus10007864.BGIv1.0 annot-version=v1.0 ATGAGGCGAGCCACGAGGTCGTGGATCGCGATTCCGGCGTCGTTATTGCTGCTGTTGTTGCTGTTGTGTGTTTGCTCATCTCTGTCCGCAGTGGTGGCGC AATCGGAAGAGAAGGTGATTCATCAAGTTACGGAGAAAGAATCCGGCGACGTATGCGGTGGTTCGTCTGTTCCTCCGGCGGCGTCCTCGTGCCCGATCAA CTGCTTCCGTGCCGATCCGGTCTGCGGCGTCGACGGCGTCACGTACTGGTGCGGATGCGCCGACGCTGCGTGCCATGGGACTAAGGTGGCGAAGCTAGGA GCGTGCGAGGTCGGAAGCGGAGGCAGCACCGCTTCCCTCCCTGGTCAGGCGCTCCTCCTTGTTCACATCGTTTGGCTCTTCTTGCTCGGCTTCTCTTTGC TGTTCGGCCTCTTCTGA
AA sequence Show only first row Show all	>Lus10007864 pacid=23143173 polypeptide=Lus10007864 locus=Lus10007864.g ID=Lus10007864.BGIv1.0 annot-version=v1.0 MRRATRSWIAIPASLLLLLLLLCVCSSLSAVVAQSEEKVIHQVTEKESGDVCGGSSVPPAASSCPINCFRADPVCGVDGVTYWCGCADAACHGTKVAKLG ACEVGSGGSTASLPGQALLLVHIVWLFLLGFSLLFGLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	0	1
					Lus10016421 [exp]	3.0	0.8435
					Lus10024338 [exp]	3.9	0.8189
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	6.5	0.8306
AT3G16180			Major facilitator superfamily ...		Lus10014537 [exp]	7.5	0.7972
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	8.5	0.8072
AT1G59970			Matrixin family protein (.1)		Lus10030662 [exp]	11.8	0.8187
AT1G57680			unknown protein		Lus10008842 [exp]	12.2	0.7874
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	12.4	0.7840
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	20.8	0.7721
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	22.0	0.7915

Compare expression of checked genes

Lus10007864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.