Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62840 390 / 1e-138 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030165 [exp] 182 / 4e-58 AT5G62840 149 / 1e-44 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074700 [exp] 401 / 4e-143 AT5G62840 407 / 3e-144 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10007865 pacid=23143199 polypeptide=Lus10007865 locus=Lus10007865.g ID=Lus10007865.BGIv1.0 annot-version=v1.0 ATGCCGCCGTTCCGCCTCATCAATCGATACTATTTGGTGAGAGCTGGGGAGTCCGAGTTCGAGAGCCTGGGGATAATAAACACGAATCCGGTTGCGAAAA CATCCGTCGACAACGGTCTTTCCGAGATAGGAAAGAAGCAGACTGTGAAATCGGCTCTCAAGTTGAAATCCATCGGAGCTTGTGACGATGGGTGCTGGAT TTGGCCTTCTATTACCCAGAGAGCTTATCAGGCCGCTGAAGTTATTGCTGCTGTTAATGGCATCACTAGGAGTTACATAGTTCCTGAGTACAGCTTCTTG GATGCTCGTGGGTTGGGAGGATACGAAGGCAAGAGCCTAGAGGCTGTCTCAGAAGTGTATGCATCGGATGCTATTTCTCAAAGAAGCAAACCACCACCGA TCGACGATGGGACACCAAGCGAGAGCATCCAGGACGTGTTTGTTCGTGTGACACAACTCATGTCTATTCTCGAGACCCAGTATGCTGGCGAAACAGTCGT CATTGTCTCCCCCGACTCCGACAATTTGTCGGTCCTGCAAGCTGGTCTGGTTGGTCTCGACCTTCGAAGGCATCATGAGCTTGCTTATGCTCCAGGGGAA GTTCGTTATGTGGATATCAATAGTGTACCTACATACAAGCAACCTGCATCTGCTGTGTACAAATGTCTCAACCCGCCTAACTGTACTTAA
AA sequence Show only first row Show all	>Lus10007865 pacid=23143199 polypeptide=Lus10007865 locus=Lus10007865.g ID=Lus10007865.BGIv1.0 annot-version=v1.0 MPPFRLINRYYLVRAGESEFESLGIINTNPVAKTSVDNGLSEIGKKQTVKSALKLKSIGACDDGCWIWPSITQRAYQAAEVIAAVNGITRSYIVPEYSFL DARGLGGYEGKSLEAVSEVYASDAISQRSKPPPIDDGTPSESIQDVFVRVTQLMSILETQYAGETVVIVSPDSDNLSVLQAGLVGLDLRRHHELAYAPGE VRYVDINSVPTYKQPASAVYKCLNPPNCT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62840			Phosphoglycerate mutase family...		Lus10007865 [exp]	0	1
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	1.4	0.9646
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	1.7	0.9560
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	2.0	0.9636
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10036207 [exp]	2.8	0.9476
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	5.5	0.9358
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10037072 [exp]	6.2	0.9180
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10022420 [exp]	7.1	0.9274
AT3G12345			unknown protein		Lus10023467 [exp]	8.2	0.9197
AT2G21960			unknown protein		Lus10005779 [exp]	8.5	0.9353
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10015380 [exp]	13.6	0.9302

Compare expression of checked genes

Lus10007865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.