Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02460 719 / 0 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) AT4G09140 157 / 1e-39 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) AT4G35520 85 / 1e-16 MLH3, ATMLH3 MUTL protein homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030376 [exp] 1419 / 0 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10010284 [exp] 568 / 0 AT4G02460 193 / 3e-55 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10033274 [exp] 147 / 2e-36 AT4G09140 1066 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10034734 [exp] 121 / 4e-28 AT4G09140 504 / 3e-167 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10016691 [exp] 93 / 4e-19 AT4G35520 360 / 8e-105 MUTL protein homolog 3 (.1) Lus10035985 [exp] 89 / 1e-17 AT4G35520 354 / 1e-102 MUTL protein homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130800 [exp] 833 / 0 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Potri.019G078700 [exp] 160 / 1e-40 AT4G09140 1071 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Potri.005G101900 [exp] 95 / 1e-19 AT4G35520 763 / 0.0 MUTL protein homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08676 [flax] [poplar] MutL_C MutL C terminal dimerisation domain CL0329 [flax] [poplar] S5 PF01119 [flax] [poplar] DNA_mis_repair DNA mismatch repair protein, C-terminal domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10007866 pacid=23143234 polypeptide=Lus10007866 locus=Lus10007866.g ID=Lus10007866.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGTTCTTCTTCTTCTCCGGCGGCGATTAAGCCGATAAACAGAAGCGTGGTGCACAGAATCTGCGCCGGTCAAGTCATTTTGGACCTTCCAT CTGCTGTGAAGGAGCTCGTGGAGAACAGCTTGGACGCCGGCGCCACCAGCATCGAAATCTGCCTCAAAGAGCACGGTGAAGAGTGGTTCCAGGTCATTGA CAACGGCTGCGGCATCTCTCCGGATGATCACAAGATAGCCAACGCCCAAACGTCTTGTCAGGTTGTGGCACTTAAGCATCACACATCCAAGCTGTGTGAT TTTCCGGATCTTCAATCCGTGGCGACGTTTGGTTTCAGAGGGGAGGCGATCAGCTCCCTGTGCGCGTTAGGAGATGTGACCATCGAGACCAGAACCAAGA ACGAGACGATAGCAACTCACCTGAGTTTCGACCACTCGGGTGTATTGGTTGGAGAAAGGAGACTAGCAAGGCAGGTTGGGACGACTGTGACGGTTAAGAA GCTCTTCTCCAATTTGCCAGTAAGGAGCAAGGAGTTCAAGCGAAACATACGCAAAGAGTTCGGGAAGCTTATTTCCTTGCTCAATGCATATGCACTTATC GCGAAAGGTGTCCGGTTTATCTGTAGCAATACAACTGCAAAAAATGTGAAGTCTGTGGTACTGAAAACACAGGGAAGTGATTCCTTGAAGGACAATATCA TAACTGTTCTTGGTGTGAACATCTTCGGCTGCTTACAGACGGTGAGCATACCTATATCAGATGGCTGCAAAGTTGAAGGCTTCCTCTCTAAGCCTGGACA GGGAAGCGGTCGTAATTTGGGAGATAGACAATACTATTTCGTAAATGGTCGGCCAGTTGATATGCCCAAGGTCAACAAACTTATCAACGAGTTATACAAG GGGGCAAACTCCAGACAATATCCTATTACAATACTGAATTTCACGCTCCCGACCAACGAATGTGATGTCAATGTGACTCCTGATAAGAGAAAAGTATTCT TTTCTGATGAGAGCGTGATACTGCTTGCCCTAAGGGAGGGTTTGCAGCAGATTTATTCCCCTAGTAACGCCTCTTATACCGTTAATCAATTGGAAGAGTG CACCGATGTAGCAGAGAGCCCTAAGTTATCTTCTTCTGCGAGGAAGTCTTCTTTGTTGTCAAAACAGGAGTCGTCTGAAGATGGTAGAGGCAGCAAAGAG ACCTGCATGGATAATGATGGGGCCATTGTAAGTATTCCTTTTGATGGTGTTGAAACTGAGCCCGAGCCATTTGATGCTAGTAAGAGACTGAGCACCGGAA TTGATGAGAAGTTTGCAATGAAGAGATTTGGTATTGGATTGCATCGAAGTAACACGACTGATTCACCAAATAAGAGTAGCAAAGTCCCAAGCCCTCTCAA TGTTGATTTGGATCAAAATTCCCCATCTACCGATAGAGTTATTGAGAAAGATGTTAACAATAAGGATGGGAGTATTGCATTATCCACTGTGCAGTCAACA CTGAAGAAGTTTGTAACTGTAAATAAGAGGAAGCGTGAAGATGTTGGTCCACCAATATCTGAAATCCCTGTTCTAAGAAACCAAATTGCTCATTTTCCTC CAGAAAAGAGAACTTCTGGAGTGTGTGGGGCTGATAAAAGCCTGTTTGTTGCTCATCGGCAAAGCAGTTATTTTGATAACTTGATGGAGACTGAGATACC CAATAATCTTGGAGCAGATAAGTCGGCAAGTTCCTTGCTGTCTGGTATATCTGCACATGTTGAAGATGGAAAGGAGGATCCTGTGGTTGAAGGGAACATA TTATTTACAGAGGAAGCTGCACTTGCAATTTCAGAAGCTGCTCGCTGTGATGTGTTAGTTGATGCTCCAGTGCCATCTGCTGCAAAGAAGACGACTTCCA CGCTGCAGTTTAGATCTCAAGACTTGACGGCAAAGAGAAAACAGATTCGGTCAAGAATGAAGTCTCACGATGGTGCTAGTGACATCATTAACATTACAAG TCATCTGAGCTATGCTGCTGCCACAATGGAGCTTTCTCAACCTGAGGATGGTGAGCGTAAATCTAAAGCTTTAGCGGCTGCAACTACCGAGTTGGATAGA CTTTTCGAGAAAGAGGACTTTGGCAGAATGAAGGTGATAGGCCAGTTTAATCTTGGATTTATCATCGGGAAGCTAGACAAAGACCTGTTTATTGTGGATC AGCATGCAGCCGATGAGAAATATAATTTTGAGCGGCTGTGCCAGTCAACCATCTTGAACCAGCAGCCATTGCTTCGGCCGTTGAGGTTAGAGTTGACACC AGAGGAGGAAGTAGTTGCAGCCATGAACATGGACATAGTCAGGTGA
AA sequence Show only first row Show all	>Lus10007866 pacid=23143234 polypeptide=Lus10007866 locus=Lus10007866.g ID=Lus10007866.BGIv1.0 annot-version=v1.0 MAAGSSSSPAAIKPINRSVVHRICAGQVILDLPSAVKELVENSLDAGATSIEICLKEHGEEWFQVIDNGCGISPDDHKIANAQTSCQVVALKHHTSKLCD FPDLQSVATFGFRGEAISSLCALGDVTIETRTKNETIATHLSFDHSGVLVGERRLARQVGTTVTVKKLFSNLPVRSKEFKRNIRKEFGKLISLLNAYALI AKGVRFICSNTTAKNVKSVVLKTQGSDSLKDNIITVLGVNIFGCLQTVSIPISDGCKVEGFLSKPGQGSGRNLGDRQYYFVNGRPVDMPKVNKLINELYK GANSRQYPITILNFTLPTNECDVNVTPDKRKVFFSDESVILLALREGLQQIYSPSNASYTVNQLEECTDVAESPKLSSSARKSSLLSKQESSEDGRGSKE TCMDNDGAIVSIPFDGVETEPEPFDASKRLSTGIDEKFAMKRFGIGLHRSNTTDSPNKSSKVPSPLNVDLDQNSPSTDRVIEKDVNNKDGSIALSTVQST LKKFVTVNKRKREDVGPPISEIPVLRNQIAHFPPEKRTSGVCGADKSLFVAHRQSSYFDNLMETEIPNNLGADKSASSLLSGISAHVEDGKEDPVVEGNI LFTEEAALAISEAARCDVLVDAPVPSAAKKTTSTLQFRSQDLTAKRKQIRSRMKSHDGASDIINITSHLSYAAATMELSQPEDGERKSKALAAATTELDR LFEKEDFGRMKVIGQFNLGFIIGKLDKDLFIVDQHAADEKYNFERLCQSTILNQQPLLRPLRLELTPEEEVVAAMNMDIVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	0	1
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	1.7	0.7544
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	4.2	0.7258
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10003769 [exp]	5.5	0.6886
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	6.6	0.7369
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	6.9	0.6998
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	8.8	0.6717
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	10.8	0.6660
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	11.5	0.6815
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	13.3	0.6538
AT3G01720			unknown protein		Lus10014878 [exp]	15.9	0.6567

Compare expression of checked genes

Lus10007866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.