Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02860 199 / 3e-64 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT2G38920 129 / 4e-37 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT3G07200 42 / 5e-05 RING/U-box superfamily protein (.1.2) AT3G27330 40 / 0.0003 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G28270 39 / 0.0003 ATRMA2 RING membrane-anchor 2 (.1) AT1G18660 40 / 0.0004 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT4G03510 39 / 0.0004 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G27470 38 / 0.001 ATRMA3 RING membrane-anchor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030375 [exp] 273 / 4e-93 AT1G02860 386 / 1e-134 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10012290 [exp] 117 / 4e-32 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10015986 [exp] 116 / 8e-32 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10015722 [exp] 42 / 7e-05 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 42 / 8e-05 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022324 [exp] 39 / 0.0006 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032119 [exp] 39 / 0.0008 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205400 [exp] 221 / 1e-72 AT1G02860 437 / 5e-155 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.014G130300 [exp] 216 / 4e-71 AT1G02860 448 / 3e-159 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.006G198600 [exp] 129 / 5e-37 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.016G064600 [exp] 128 / 1e-36 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.013G132300 [exp] 42 / 4e-05 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.001G336832 [exp] 41 / 0.0001 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G068100 [exp] 39 / 0.0007 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007867 pacid=23143182 polypeptide=Lus10007867 locus=Lus10007867.g ID=Lus10007867.BGIv1.0 annot-version=v1.0 ATGGCTTTCCATATCAACTTGAGAGCAACATCATCAAACAAACCACCTCCTGCTGCTGGTGCTGCTTCTTCGAATCTATTCCGGGGCTCCTCCCTTTCTT TTGATGATGAACATAGTAAAAAGCCATCATTGTCTTGTGACCTCTTTGACTCAAAAAAGGTTGACATTGATCTCACTTGTTCCATATGCCTGACGGTATT CGATCCAGTTTCACTGAGATGCGGCCATATCTTCTGCTATATCTGTGCTTGTTCAGCTGCTTCGGTAACAGTCGTTGATGGACTCCAGTCTGCTGATCCT CAACGGAAATGCCCTATTTGCAGGGAGACTGGAGTTTTTGAAGGTGTTGTGCACTTGGAAGAGCTTAACATTCTATTAAGCCAGAGTTGCAAAGAGTATT GGGAGGAGAGGCTTCAATCAGAAAGGCGAGAGAGGGTTAAGCAAGCAAAACAGCACTGGGAAAACTAG
AA sequence Show only first row Show all	>Lus10007867 pacid=23143182 polypeptide=Lus10007867 locus=Lus10007867.g ID=Lus10007867.BGIv1.0 annot-version=v1.0 MAFHINLRATSSNKPPPAAGAASSNLFRGSSLSFDDEHSKKPSLSCDLFDSKKVDIDLTCSICLTVFDPVSLRCGHIFCYICACSAASVTVVDGLQSADP QRKCPICRETGVFEGVVHLEELNILLSQSCKEYWEERLQSERRERVKQAKQHWEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10007867 [exp]	0	1
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	11.8	0.8371
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	27.2	0.7944
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	44.2	0.7870
AT4G20300			Protein of unknown function (D...		Lus10038379 [exp]	51.0	0.7945
AT4G35530			phosphatidylinositolglycan-rel...		Lus10002922 [exp]	63.9	0.7850
AT1G36730			Translation initiation factor ...		Lus10010981 [exp]	68.5	0.7659
					Lus10016322 [exp]	71.8	0.7804
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	74.8	0.7869
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	92.0	0.7621
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10000428 [exp]	95.0	0.7546

Compare expression of checked genes

Lus10007867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.