Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02840 281 / 4e-95 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 266 / 3e-89 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G09140 257 / 6e-86 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT3G49430 241 / 7e-79 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT2G24590 62 / 3e-11 RSZ22a, At-RSZ22a RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT4G25500 63 / 4e-11 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT4G31580 61 / 5e-11 SRZ22, RSZP22, SRZ-22, RSZ22, At-RSZ22 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) AT3G61860 62 / 6e-11 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G52040 62 / 1e-10 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G53500 61 / 1e-10 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003606 [exp] 306 / 6e-105 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10020656 [exp] 264 / 4e-87 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10015564 [exp] 246 / 1e-81 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10032940 [exp] 248 / 2e-81 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10008218 [exp] 245 / 3e-80 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10029885 [exp] 228 / 6e-72 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10030374 [exp] 152 / 2e-45 AT1G02840 147 / 8e-45 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10020123 [exp] 64 / 2e-12 AT4G31580 188 / 2e-61 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10026925 [exp] 64 / 2e-12 AT4G31580 184 / 2e-59 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205025 [exp] 300 / 5e-102 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.014G129900 [exp] 291 / 1e-98 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.013G015500 [exp] 270 / 1e-90 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.005G024600 [exp] 267 / 2e-89 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.015G004600 [exp] 247 / 5e-82 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.012G021800 [exp] 244 / 3e-80 AT3G49430 317 / 2e-108 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.016G081700 [exp] 67 / 1e-12 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.006G215200 [exp] 65 / 4e-12 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.014G101800 [exp] 64 / 6e-12 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G050600 [exp] 62 / 1e-11 AT1G23860 131 / 3e-39 RS-containing zinc finger protein 21 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10007869 pacid=23143211 polypeptide=Lus10007869 locus=Lus10007869.g ID=Lus10007869.BGIv1.0 annot-version=v1.0 ATGAGTAGCCGTGCCAGCAGGACTATCTATGTAGGAAATCTACCTGGAGATATCCGGGAGAGGGAAGTTGAAGATTTGTTCTACAAGTATGGTCATATAG TTCAGATTGATTTGAAGATTCCACCCCGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGATGCTCGCGATGCAGAGGATGCTATTCGTGGTCGGGATGG GTATGACTTTGATGGGCATCGCTTGCGGGTGGAAATTGCACATGGTGGCCGTGGACAATCTTCCTCTGACCGTCACAGTAGCTATGGAGGGGGTGGGCGT GGACGTGGAGTATCTAGACGATCTGAATATCGTGTTATGGTCTCTGGCTTACCTTCTTCTGCTTCGTGGCAAGACCTTAAGGATCACATGAGGCGAGCAG GAGATGTCTGCTTCTCCCAGGTCTTTCGTGATGATAATGGCACTACAGGGATTGTAGATTATACAAGTTATGAAGACATGAAGTATGCAATCAGGAAACT TGATGATTCGGAGTTCCGAAACGCCTTCTCCCGGTCTTATGTTCGGGTAAGGGAGTATGATTCCAAGAGGGACTTCTCCAGGAGTCCTAGCCGTGGTAGA TCTCGCAGCAGAAGCAGAAGCCGAACTCGAAGCCGCAGCCGCAGTTTAAGCCGGAGCAAGTCTCATGACAATAAATCTTCTCGCCGTTCGCCTGTCAGAT CCAAGTCAAGATCTTTCTCTCGCTCAAGGTCACGCTCTTTGTCCAGATCACAGTCCAGATCGAGATCTCCAGTTCCATCTGTAAGTAAGCTTTCTCATGC TCGGTTAGAAGACGTGATCAACCTGCTATAA
AA sequence Show only first row Show all	>Lus10007869 pacid=23143211 polypeptide=Lus10007869 locus=Lus10007869.g ID=Lus10007869.BGIv1.0 annot-version=v1.0 MSSRASRTIYVGNLPGDIREREVEDLFYKYGHIVQIDLKIPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGHRLRVEIAHGGRGQSSSDRHSSYGGGGR GRGVSRRSEYRVMVSGLPSSASWQDLKDHMRRAGDVCFSQVFRDDNGTTGIVDYTSYEDMKYAIRKLDDSEFRNAFSRSYVRVREYDSKRDFSRSPSRGR SRSRSRSRTRSRSRSLSRSKSHDNKSSRRSPVRSKSRSFSRSRSRSLSRSQSRSRSPVPSVSKLSHARLEDVINLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10007869 [exp]	0	1
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	21.7	0.8184
AT2G24300			Calmodulin-binding protein (.1...		Lus10019056 [exp]	35.0	0.8020
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10015553 [exp]	37.1	0.7714
AT3G01130			unknown protein		Lus10042059 [exp]	38.9	0.8049
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10005571 [exp]	54.3	0.7764
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	58.7	0.7621
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	61.3	0.7649
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	65.7	0.7499
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	80.8	0.7774
					Lus10004960 [exp]	101.7	0.7517

Compare expression of checked genes

Lus10007869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.