Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02440 379 / 5e-132 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) AT5G39360 53 / 5e-08 EDL2 EID1-like 2 (.1) AT5G15440 52 / 3e-07 EDL1 EID1-like 1 (.1) AT3G63060 44 / 8e-05 EDL3 EID1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030373 [exp] 552 / 0 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10028001 [exp] 56 / 9e-09 AT3G63060 312 / 6e-107 EID1-like 3 (.1) Lus10029662 [exp] 54 / 3e-08 AT5G39360 423 / 4e-152 EID1-like 2 (.1) Lus10025639 [exp] 53 / 9e-08 AT5G39360 429 / 2e-154 EID1-like 2 (.1) Lus10018196 [exp] 53 / 9e-08 AT5G39360 364 / 6e-129 EID1-like 2 (.1) Lus10042699 [exp] 52 / 1e-07 AT5G39360 428 / 4e-154 EID1-like 2 (.1) Lus10000659 [exp] 51 / 2e-07 AT3G63060 212 / 1e-68 EID1-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205150 [exp] 412 / 4e-145 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.014G130000 [exp] 410 / 4e-144 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.004G125000 [exp] 55 / 1e-08 AT5G39360 418 / 4e-150 EID1-like 2 (.1) Potri.017G090300 [exp] 54 / 2e-08 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.019G023500 [exp] 44 / 6e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007870 pacid=23143229 polypeptide=Lus10007870 locus=Lus10007870.g ID=Lus10007870.BGIv1.0 annot-version=v1.0 ATGGACGAATTCGCCAAGCTCTCCGACGACCTCCTCCTCAAAATCCTCTTCAACCTTCAAGACGACCCACGCAACTGGTCTCGACTAGCCTGCGTCTGCT CCAAGTTCTCCTCTCTCGTCCGCAACACCTGCTGGAAGTCCAAATGCTACTCCACTATCCCAGCCCTCGTCGCCGATCTCCTCCCTTCTGAGTCTTCCAA CTCCGTCCCCGGTGGCTGGTCTGCTCTCTACAAGCTCACTGTCTGCTGCCCTGGCCTCCTCCTCTCAGGCGTCCTCCTTGAACACTCTGATTTCGGCCTC GATCTGGATCTCGGCCCTGAGGAGAATTTCCCTAGACCTTCCTCCTCCTCCTCCAGCTCATCCGGTTTGTTATTACAAGATTCCTCTTCCAATGCTAATC TGGCCGTCGCCGATTGCTCGTGGTCGTTATTCGACGATCTCTATTGCGACACTGTTTATAACGTAGATGAACCGTCTGAAGCTCGTCCTGCACAAGAGGT TGGTGACGATGATACCACCACTACCACTGCCGCCGCCGTTGTTGTTAAGGTGGGAACGGATGCTCCGTTGCTGCCTCGTAAGCGGAGGAAGATCTGCAGG TCGATGCGGTCTCATTTGGCGACCGGAGTGTGGAACCTGAGCCGTGAGCAAGGGAACAAGCTGCTGGCGAGTCGGTTCCGCGGGGACTGTCTGTACATCT GTGAGTGGCCCGGCTGTGTTCACGTCGAGGAGAAGAGGAACTACAATCTCTTCAGAGGGATTTTCAAGAACTTTAAGCGGTCTAGAGTTTGGAGGACGAT AAACGATGGCAATAGGAAGAAGATCGATGTCAATTGTGCCTTCTGTGGGTGTAGACAGACCTGGGATCTCCACTCTGCTTTCTGCTTGAGGAGAGTTTAT GGCTTCCACGACGATGGCGAGCCTGCTGTCCGAGCTTATGTATGTGAAAATGGCCATGTCTCCGGGGCCTGGACCGACTTGCCCTTGTTTATTTGA
AA sequence Show only first row Show all	>Lus10007870 pacid=23143229 polypeptide=Lus10007870 locus=Lus10007870.g ID=Lus10007870.BGIv1.0 annot-version=v1.0 MDEFAKLSDDLLLKILFNLQDDPRNWSRLACVCSKFSSLVRNTCWKSKCYSTIPALVADLLPSESSNSVPGGWSALYKLTVCCPGLLLSGVLLEHSDFGL DLDLGPEENFPRPSSSSSSSSGLLLQDSSSNANLAVADCSWSLFDDLYCDTVYNVDEPSEARPAQEVGDDDTTTTTAAAVVVKVGTDAPLLPRKRRKICR SMRSHLATGVWNLSREQGNKLLASRFRGDCLYICEWPGCVHVEEKRNYNLFRGIFKNFKRSRVWRTINDGNRKKIDVNCAFCGCRQTWDLHSAFCLRRVY GFHDDGEPAVRAYVCENGHVSGAWTDLPLFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	0	1
					Lus10011573 [exp]	1.0	0.8886
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	2.4	0.8743
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	3.0	0.8739
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	5.2	0.8459
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10008402 [exp]	5.5	0.8614
AT3G46520		ACT12	actin-12 (.1)		Lus10029286 [exp]	5.9	0.8489
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022665 [exp]	7.3	0.8569
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	8.2	0.8621
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	11.8	0.8411
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	12.2	0.8300

Compare expression of checked genes

Lus10007870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.