Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02850 613 / 0 BGLU11 beta glucosidase 11 (.1.2.3.4.5) AT4G27830 542 / 0 BGLU10 beta glucosidase 10 (.1) AT4G22100 528 / 0 BGLU3 beta glucosidase 2 (.1) AT1G45191 521 / 0 BGLU1 beta glucosidase 1, Glycosyl hydrolase superfamily protein (.1.2) AT4G27820 518 / 0 BGLU9 beta glucosidase 9 (.1) AT1G60090 516 / 2e-180 BGLU4 beta glucosidase 4 (.1) AT3G62750 499 / 6e-174 BGLU8 beta glucosidase 8 (.1) AT3G62740 489 / 6e-170 BGLU7 beta glucosidase 7 (.1) AT1G60260 472 / 9e-164 BGLU5 beta glucosidase 5 (.1) AT1G26560 435 / 2e-148 BGLU40 beta glucosidase 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007872 [exp] 787 / 0 AT1G02850 621 / 0.0 beta glucosidase 11 (.1.2.3.4.5) Lus10031235 [exp] 426 / 7e-145 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 424 / 4e-144 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 423 / 9e-144 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10036885 [exp] 422 / 1e-143 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 421 / 5e-143 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10012687 [exp] 418 / 2e-141 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10009644 [exp] 405 / 2e-136 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10008503 [exp] 403 / 8e-136 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094200 [exp] 421 / 4e-143 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 419 / 1e-142 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.T085301 [exp] 416 / 3e-141 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 416 / 4e-141 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 416 / 4e-141 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 412 / 1e-139 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.015G041300 [exp] 397 / 9e-134 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.012G049300 [exp] 393 / 4e-132 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.001G227300 [exp] 392 / 8e-132 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227200 [exp] 386 / 2e-129 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10007871 pacid=23143174 polypeptide=Lus10007871 locus=Lus10007871.g ID=Lus10007871.BGIv1.0 annot-version=v1.0 ATGGAAGGAAGTTCTTGGTGGGTCGTAAGGTGGCGGTTGATGGTTCTGTTGTTCTTGAATTGGCCAGCTGCAGTCGTTTGTTTCACAGTTGATGAGTACA GCAGAGCTGATTTTCCAGATGGGTTTATATTTGGAGCTGGGACATCTTCTTATCAGGTGGAAGGAGCTGCGAACCAGGATGGGAGAAGCCCGAGTGTTTG GGACACCTTTGCCCATGCAGGATATGCTGGTGGAACAACGGGAGACATCGCAGTTGACCAGTACAATAAATACAAGGAGGACGTCCGGCTAATGGCTGAA ACGGGGTTGGATTCTTACAGATTCTCAATTTCATGGTCCAGGCTTATCCCTGGTGGAAGAGGAGATGTGAATCCTAAAGGGCTTAAATACTATAACAATC TCATCAATGAACTCATTAGCCATGGAATCCAGCCAATGGTTTCATTGTACAACTTCGATCATCCTCAGATTCTTGAAGATGAATACGGTGGATGGGTTAG TCGAAGAATTGTGGAAGATTTCAGAGATTATGCGGAGGTGTGCTTCAGGGAATTCGGAAACAGGGTTTCACATTGGACGACCGTAAATGAGCCCAATATC TTGGCGCAGGGTAGCTACGATCAGGGACTGACCCCTCCTCGCCATTGCTCACCTCCATTTGGGATTACAATGTGCGATCATGGGAATTCCACTACAGAAC CCTACCTGGTTCTTCACCATGTACTCCTGGCACACAGCTCCACCGTCGAGTTGTATAGGCAGAAATATCAGGCGAAGCAACATGGGTTCATCGGGATTTC ACTCTACGCTTTTCATTTTGTTCCATACACAAACTCAACCGAAGATATACAAGCGACTCAAAGAGCCAAAGAATTCTACCTTGGATGGGCTGCAGAACCA TTGGTTCACGGGGACTACCCAGAGATCATGAAAAGGAACGTCGGGTCAAGACTTCCGACTTTCACAAGGGAGGAGTCGGAATTGGTGAAGGGAGCTTTCG ACTTCCTGGGGCTCATTCATTATATGCAGTTGCAAGTCAAAGACAACTCCAAGAGTCTCAATATGGAGGTCCGAGACTTCATTGCAGACATGGCCGCCCA AGTGATCGTAACTCCCTGGGCTCTGCAGGACATCTTGGAAGATTTCAAGCTGCTGTATGGGAACCCTCCTCTCTATATCCATGAAAATGGTCAAGTCAAC GTACGGAACACAAGTCTGAAAGATACGAAGAGGGTAGAGTATATGCACGCTTACATTGGAACTGTCCTCGATGCAATCAGGAACGGGTGCGACGTGAAAG GTTACTTTGTATGGTCACTGCTGGACGTGTTCGAGCTGTTGAGTGGCTTCCAGACCGGATTCGGACTCTATTATGTGGATTTGGACGACCCGAACCTGAA ACGATACCCCAAGCTCTCTGCTCACTGGTATTCCCGTTTCCTGAAAGGTGGCACCGTCAGATCCTCCATCAACCTGAGCTCTGATCTCCGTCGCCGCCAG TATTCTTCTCGCTAG
AA sequence Show only first row Show all	>Lus10007871 pacid=23143174 polypeptide=Lus10007871 locus=Lus10007871.g ID=Lus10007871.BGIv1.0 annot-version=v1.0 MEGSSWWVVRWRLMVLLFLNWPAAVVCFTVDEYSRADFPDGFIFGAGTSSYQVEGAANQDGRSPSVWDTFAHAGYAGGTTGDIAVDQYNKYKEDVRLMAE TGLDSYRFSISWSRLIPGGRGDVNPKGLKYYNNLINELISHGIQPMVSLYNFDHPQILEDEYGGWVSRRIVEDFRDYAEVCFREFGNRVSHWTTVNEPNI LAQGSYDQGLTPPRHCSPPFGITMCDHGNSTTEPYLVLHHVLLAHSSTVELYRQKYQAKQHGFIGISLYAFHFVPYTNSTEDIQATQRAKEFYLGWAAEP LVHGDYPEIMKRNVGSRLPTFTREESELVKGAFDFLGLIHYMQLQVKDNSKSLNMEVRDFIADMAAQVIVTPWALQDILEDFKLLYGNPPLYIHENGQVN VRNTSLKDTKRVEYMHAYIGTVLDAIRNGCDVKGYFVWSLLDVFELLSGFQTGFGLYYVDLDDPNLKRYPKLSAHWYSRFLKGGTVRSSINLSSDLRRRQ YSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007871 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10016793 [exp]	8.9	0.7190
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	13.3	0.7279
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10035115 [exp]	17.1	0.7726
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10039861 [exp]	23.8	0.7220
AT5G33280			Voltage-gated chloride channel...		Lus10038118 [exp]	25.9	0.6738
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	27.2	0.7018
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	35.6	0.7329
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	39.9	0.7283
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	51.4	0.7163
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	51.6	0.6712

Compare expression of checked genes

Lus10007871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.