Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02850 598 / 0 BGLU11 beta glucosidase 11 (.1.2.3.4.5) AT4G27830 542 / 0 BGLU10 beta glucosidase 10 (.1) AT4G22100 519 / 0 BGLU3 beta glucosidase 2 (.1) AT4G27820 508 / 2e-177 BGLU9 beta glucosidase 9 (.1) AT1G45191 499 / 1e-173 BGLU1 beta glucosidase 1, Glycosyl hydrolase superfamily protein (.1.2) AT3G62750 496 / 9e-173 BGLU8 beta glucosidase 8 (.1) AT1G60090 496 / 1e-172 BGLU4 beta glucosidase 4 (.1) AT3G62740 488 / 1e-169 BGLU7 beta glucosidase 7 (.1) AT1G60260 459 / 2e-158 BGLU5 beta glucosidase 5 (.1) AT1G26560 437 / 1e-149 BGLU40 beta glucosidase 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007871 [exp] 779 / 0 AT1G02850 622 / 0.0 beta glucosidase 11 (.1.2.3.4.5) Lus10036885 [exp] 423 / 7e-144 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 417 / 1e-141 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10031235 [exp] 417 / 1e-141 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 415 / 2e-140 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 411 / 3e-139 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10009644 [exp] 411 / 7e-139 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10012687 [exp] 396 / 7e-133 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10008503 [exp] 391 / 4e-131 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040700 [exp] 411 / 2e-139 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 407 / 9e-138 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 407 / 2e-137 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.008G094200 [exp] 405 / 7e-137 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.001G015100 [exp] 404 / 3e-136 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.015G041300 [exp] 402 / 7e-136 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.010G159900 [exp] 397 / 5e-134 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G227300 [exp] 392 / 7e-132 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.012G049300 [exp] 391 / 2e-131 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.001G227200 [exp] 389 / 1e-130 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10007872 pacid=23143187 polypeptide=Lus10007872 locus=Lus10007872.g ID=Lus10007872.BGIv1.0 annot-version=v1.0 ATGTTGATCATCTTCCAACTTGTTGCCGATTGTTTGGGTGTGGACGAGTACAGCAGAGCTGATTTCCCAGATGGGTTCGTATTCGGAGCAGGGACGTCGG CTTACCAGGTCGAAGGAGCTGCCAACTTGGACGGACGGACTCCCAGCGTCTGGGACACTTACGCTCACTCTGGCTACTCCGGCGGTGCCACCGGCGATGT TGCTGTCGATCAGTACCATAAATACAAGGAAGATGTTGAACTGATGGCTGAAACAGGGCTGGATTCTTACCGGTTCTCCATCTCTTGGTCTAGACTCATC CCCGGTGGGAGAGGAGATGTGAATCCAAAAGGAATCCAGTACTACAACAATCTCATCGACGAGCTCATTAGCCACGGAATGGAGCCGCAGGTTTCTCTCT ACAACTTCGACCATCCCCAGATCATCGAGGACGAGTACGGCGGATGGGTCAACCGGAAGATTGTGGGAGATTTCAGAGAGTATGCAGAGGTGTGCTTCAG GGAGTTTGGCGACAGAGTTTCGCACTGGACTACTGTCAACGAGCCCAACATTTTAGCATCCGGGAGCTACGATCAAGGGATAGCCCCACCTCACCGTTGC TCGCCGCCGTTTGGCCTCACGGCTTGCTCACGTGGCAATTCCTCTACTGAGCCTTACCTTGCCCTCCACCATATCCTCCTCGCTCACGCCTCCGCCGTCA AAGTTTACAGGGAAAAGTATCAGGGGAAGCAACATGGGCTTATTGGGATATCGCTCTACAGTTATGGTTACGCGCCCTACTCCAACTCCACCCAGGATTT ACTGGCTGTCCAGAGAGCCAAACAGTTCTCCCTTGGCTGGGTAGCAGAGCCGTTGGTATATGGGGATTATCCAGAGATCATGAAGAGGAACGTAGGGTCG AGATTGCCCCGGTTTTCGACCGAAGAATCGGATATGGTGAAGGGAGCTTACGACTTCCTGGGACTCATACATTACATGCAGATGACTATTAAAGACGACC CCAACAGCCTCAATTTGGAGGTCCGAGACTACAATGCTGACACCGGCACTCAGATGATGGAGGGCTTGGACAGTTATCTGCATGGGTTCCCAGTGACTCC ATGGGCTCTTCGAGACATTTTGGAGGACTTCAAGCACCTTTATGGGAACCCTCCTCTCTACATCCATGAAAATGGTCAACTCAACGTACGCAACACAAGT TTGAAAGACACAGAGAGGGTGGAGTTCTTGCATGCCTATATGGGTGCTGCATTGGATGCCATTAAGGATGGGTGCAATGTGAAAGGTTACTTCGTCTGGT CGTTGTTGGATGTGTTCGAGTTGCTAGGAGGCTTCCGGACCGGATTCGGTCTCTATTACGTGGATTTAGACGACCCGGACCTAACTCGATATCCTAAACT CTCTGCTCATTGGTATTCTCGTTTTCTCAAAGGAGCGACCGTTAGCTCTCGAGCCAACATTGAGCTCGCTGTTGATTTGAGCGGCTTGACGAATAGTGGT CGTTATCCACGACAACATTCTTCTCGTTAA
AA sequence Show only first row Show all	>Lus10007872 pacid=23143187 polypeptide=Lus10007872 locus=Lus10007872.g ID=Lus10007872.BGIv1.0 annot-version=v1.0 MLIIFQLVADCLGVDEYSRADFPDGFVFGAGTSAYQVEGAANLDGRTPSVWDTYAHSGYSGGATGDVAVDQYHKYKEDVELMAETGLDSYRFSISWSRLI PGGRGDVNPKGIQYYNNLIDELISHGMEPQVSLYNFDHPQIIEDEYGGWVNRKIVGDFREYAEVCFREFGDRVSHWTTVNEPNILASGSYDQGIAPPHRC SPPFGLTACSRGNSSTEPYLALHHILLAHASAVKVYREKYQGKQHGLIGISLYSYGYAPYSNSTQDLLAVQRAKQFSLGWVAEPLVYGDYPEIMKRNVGS RLPRFSTEESDMVKGAYDFLGLIHYMQMTIKDDPNSLNLEVRDYNADTGTQMMEGLDSYLHGFPVTPWALRDILEDFKHLYGNPPLYIHENGQLNVRNTS LKDTERVEFLHAYMGAALDAIKDGCNVKGYFVWSLLDVFELLGGFRTGFGLYYVDLDDPDLTRYPKLSAHWYSRFLKGATVSSRANIELAVDLSGLTNSG RYPRQHSSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007872 [exp]	0	1
					Lus10013609 [exp]	18.8	0.7016
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	40.0	0.7349
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10004365 [exp]	73.8	0.6529
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10033799 [exp]	102.2	0.6687
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	110.5	0.6714
					Lus10010046 [exp]	111.5	0.6626
AT4G24380			unknown protein		Lus10020946 [exp]	122.4	0.6780
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	167.2	0.6743
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	183.7	0.6543

Compare expression of checked genes

Lus10007872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.