Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62820 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G47670 99 / 1e-25 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 79 / 3e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 71 / 5e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 66 / 3e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 66 / 3e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G20740 66 / 4e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 66 / 4e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G23205 62 / 6e-12 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 62 / 1e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030370 [exp] 182 / 3e-55 AT4G02425 142 / 2e-43 unknown protein Lus10038645 [exp] 81 / 9e-19 AT2G01610 212 / 2e-69 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 72 / 1e-15 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 69 / 2e-14 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 69 / 3e-14 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 69 / 3e-14 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 67 / 9e-14 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 64 / 1e-12 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031132 [exp] 64 / 2e-12 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129400 [exp] 172 / 2e-54 AT3G62820 163 / 6e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G109300 [exp] 85 / 3e-20 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G132600 [exp] 85 / 3e-20 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 73 / 6e-16 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 73 / 7e-16 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G137800 [exp] 71 / 3e-15 AT5G20740 205 / 2e-67 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 71 / 4e-15 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 69 / 3e-14 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 69 / 3e-14 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128400 [exp] 67 / 2e-13 AT5G62360 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10007873 pacid=23143183 polypeptide=Lus10007873 locus=Lus10007873.g ID=Lus10007873.BGIv1.0 annot-version=v1.0 ATGAAAACTTCTGCGAGCATCATTACCATCATAAAGCTAATGTTGATTTCTTTTTCAGTGAGCTACTCCTCCTCGCCGAGCTCGTACGTGGAACAAGCTT GCAGCGTGACCAAATACAAAGCCATCTGCATCCACTCCCTTGCACCATTCTCCCGCACTGCCAAGTCCAGCCCGAGCAAGTGGGCTCGAGCCGGAGTGTC AGTGACCCTATCCGAGTCCAGCAACCTCACTCGCTTCCTCACCCACCTCCTAGCCGATTCTCCGTTCGGTTCGGGTAGCAGGAATCGCGCGGCTCTATCA GACTGCTTGGAGTGCTTCCACGAAGCTGTCGATAGTCTCCATCTGTCGCTGGGAGTGGTGAGGAACTTGGAGGTGGCTAACTTCGACGCTCAGATGGATG ACTTGACCACATGGCTCAGCGCTGCTTTGACGTACGGGGACACGTGCCTTGACGGGTTCGGTGACGGTGATGGTGATGTGGTTAAGAGGAGGAGGAAGAG TGAAGTTGAGATGGTTAAGGGCAGAGTGAGGAGAGTTGGTTACATTACGAGTAATGCTTTGGCTCTTGTTAGCAGGCTTGCTTCTACTGGCTTAGAGGCT ACCAAGCCAACTTGA
AA sequence Show only first row Show all	>Lus10007873 pacid=23143183 polypeptide=Lus10007873 locus=Lus10007873.g ID=Lus10007873.BGIv1.0 annot-version=v1.0 MKTSASIITIIKLMLISFSVSYSSSPSSYVEQACSVTKYKAICIHSLAPFSRTAKSSPSKWARAGVSVTLSESSNLTRFLTHLLADSPFGSGSRNRAALS DCLECFHEAVDSLHLSLGVVRNLEVANFDAQMDDLTTWLSAALTYGDTCLDGFGDGDGDVVKRRRKSEVEMVKGRVRRVGYITSNALALVSRLASTGLEA TKPT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62820			Plant invertase/pectin methyle...		Lus10007873 [exp]	0	1
AT3G46450			SEC14 cytosolic factor family ...		Lus10004952 [exp]	2.2	0.8202
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Lus10014940 [exp]	2.8	0.8065
AT3G57990			unknown protein		Lus10012013 [exp]	6.5	0.7947
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	15.3	0.8050
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10024383 [exp]	16.6	0.7294
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002028 [exp]	16.8	0.7973
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10006224 [exp]	20.9	0.7976
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004396 [exp]	21.8	0.7677
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	24.7	0.7608
AT1G16810			unknown protein		Lus10026960 [exp]	25.3	0.7886

Compare expression of checked genes

Lus10007873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.