Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62830 366 / 5e-126 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 357 / 3e-122 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 296 / 7e-100 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 229 / 8e-74 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 229 / 8e-74 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 229 / 2e-73 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G23820 63 / 5e-11 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT2G45310 58 / 2e-09 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT1G53500 57 / 5e-09 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT4G00110 56 / 8e-09 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030368 [exp] 484 / 2e-172 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 367 / 4e-126 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10006510 [exp] 288 / 2e-95 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10037499 [exp] 284 / 3e-94 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 284 / 9e-94 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10015038 [exp] 273 / 1e-89 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 264 / 4e-86 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10040847 [exp] 234 / 2e-75 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 231 / 2e-74 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204400 [exp] 387 / 2e-134 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 378 / 1e-130 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 309 / 8e-104 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 284 / 6e-94 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.008G053100 [exp] 232 / 1e-74 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 231 / 2e-74 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 230 / 6e-74 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.003G123700 [exp] 62 / 7e-11 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.017G059100 [exp] 62 / 1e-10 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 61 / 4e-10 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10007874 pacid=23143190 polypeptide=Lus10007874 locus=Lus10007874.g ID=Lus10007874.BGIv1.0 annot-version=v1.0 ATGGCGTCGGAGCTAATATTCAGAGGCCAGAACGAGGCCCATCCCGTCGCCGACACTTTCTCCCCAAAGCAACCGAAGCCCTGGCTGTCAATCTCCCGTC CAATTCGGTACCTCCTCCGGGAGCAGCGCCTCCTCTGCGTCCTCGCCGGCATTGCAATCGCCTCCCTCCTCTTCACCGTAGGCGGAAACCGAACTCCCCA GCAGCAGCTCAGCAGCTACCGTCACGACGAGCCGATGACATTCGGCAGAGAAGAATCCCAACTGACTCGCCGGCCGTCGAATTCCAAATACCCGGCGACG GCGATTAGGTCGGCGTCGGCGGGAGGTAAGATCCCGCTGGGATTGAAGAGCAAAGGACTGAGGATCGTGGTCACCGGAGGGGCCGGATTCGTGGGGTCGC ATCTGGTGGACAGGCTGATGGAGAGAGGGGACAGCGTAATCGTGGTGGACAATTTCTTCACGGGGAGGAAAGAGAACGTGATGCACCATTTCAAGAACCC TAGGTTCGAGATGATCCGACACGACGTCGTTGAGCCGCTGCTGCTCGAAGTTGACCAGATCTACCACTTGGCCTGCCCGGCTTCCCCGGTCCACTACAAA TATAACCCGGTCAAGACCATCAAGACCAACGTGGTGGGGACCCTAAACATGCTCGGGCTCGCCAAGCGGGTCGGAGCCCGGTTCTTGCTCACCAGTACCA GCGAGGTCTACGGCGACCCGCTCCAGCACCCGCAGGTCGAGACCTACTGGGGCAACGTTAACCCGATCGACGGCGCATGGTCAGTAACGTGCGCCGCCCT GGTGAGGAAAAGAGTGAAAGTCCGCCTTTCTTCTATTCGTCGGTCGGCATTTCGGTTGGTTTGGTTATAG
AA sequence Show only first row Show all	>Lus10007874 pacid=23143190 polypeptide=Lus10007874 locus=Lus10007874.g ID=Lus10007874.BGIv1.0 annot-version=v1.0 MASELIFRGQNEAHPVADTFSPKQPKPWLSISRPIRYLLREQRLLCVLAGIAIASLLFTVGGNRTPQQQLSSYRHDEPMTFGREESQLTRRPSNSKYPAT AIRSASAGGKIPLGLKSKGLRIVVTGGAGFVGSHLVDRLMERGDSVIVVDNFFTGRKENVMHHFKNPRFEMIRHDVVEPLLLEVDQIYHLACPASPVHYK YNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIDGAWSVTCAALVRKRVKVRLSSIRRSAFRLVWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007874 [exp]	0	1
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	1.0	0.9776
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	2.8	0.8780
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	4.0	0.8688
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Lus10034428 [exp]	12.5	0.8051
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	20.4	0.8522
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	25.5	0.7974
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	25.5	0.8548
AT5G08460			GDSL-like Lipase/Acylhydrolase...		Lus10028685 [exp]	27.5	0.8620
AT5G62750			unknown protein		Lus10042178 [exp]	27.9	0.8691
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	29.8	0.8216

Compare expression of checked genes

Lus10007874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.