Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62830 352 / 4e-122 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 350 / 2e-121 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 308 / 6e-105 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 255 / 2e-85 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 254 / 5e-85 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 251 / 8e-84 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT5G28840 81 / 5e-18 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT1G08200 79 / 2e-17 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 79 / 2e-17 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT2G28755 60 / 2e-12 UDP-D-glucuronate carboxy-lyase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030368 [exp] 385 / 8e-135 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 357 / 9e-124 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10006510 [exp] 339 / 3e-117 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10015038 [exp] 314 / 2e-107 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10024436 [exp] 309 / 4e-105 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 308 / 4e-105 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10001705 [exp] 257 / 3e-87 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005450 [exp] 258 / 2e-86 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 258 / 2e-86 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204400 [exp] 358 / 1e-124 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 358 / 2e-124 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G214000 [exp] 314 / 3e-107 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.016G080500 [exp] 313 / 4e-107 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.010G207200 [exp] 260 / 2e-87 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 258 / 3e-86 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 256 / 1e-85 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.005G053000 [exp] 85 / 1e-19 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.013G040600 [exp] 84 / 3e-19 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.004G189900 [exp] 77 / 9e-17 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10007875 pacid=23143219 polypeptide=Lus10007875 locus=Lus10007875.g ID=Lus10007875.BGIv1.0 annot-version=v1.0 ATGAGATGGTGGACAGGTGTAAGAAGCTGTTACGACGAAGGAAAAAGGACAGCAGAGACACTGACAATGGACTACCACAGAGGAGCAGGTGTCCAAGTTA GAATTGCCAGAATATTCAACACTTATGGACCCAGGATGTGCATCGACGATGGTCGCGTTGTCAGTAATTTCGTTGCTCAGGCTTTGAGGAAAGAGCCGTT GACGGTGTATGGAGATGGAAAGCAGACGAGGAGTTTCCAATTTGTCTCTGACTTGGTTGAGGGACTGATGCGTCTGATGGAAGGAGAGCACGTTGGACCA TTCAATCTCGGCAACCCGGGCGAGTTCACCATGCTCGAGCTCGCTCAGGTGGTCCAGGAAACCATAGACTCGAATGCCAAGATCGAGTTCAGGCCCAACA CTGAGGATGACCCGCACAAGAGGAAGCCTGACATCACAAAGGCCAAAGACCTTCTGGGTTGGGAGCCGAAGGTCTCCCTCCGCAAAGGTCTCCCTCTCAT GGTCTCCGATTTCCGGCAGCGAGTCTTCGGAGACCACAACGAAGGCAGCGGCAGCATCAGCAATGTTGCTTCGACATCTTGA
AA sequence Show only first row Show all	>Lus10007875 pacid=23143219 polypeptide=Lus10007875 locus=Lus10007875.g ID=Lus10007875.BGIv1.0 annot-version=v1.0 MRWWTGVRSCYDEGKRTAETLTMDYHRGAGVQVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP FNLGNPGEFTMLELAQVVQETIDSNAKIEFRPNTEDDPHKRKPDITKAKDLLGWEPKVSLRKGLPLMVSDFRQRVFGDHNEGSGSISNVASTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	0	1
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007874 [exp]	1.0	0.9776
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	3.2	0.8846
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	4.2	0.8872
AT3G28410			F-box/RNI-like superfamily pro...		Lus10020748 [exp]	6.5	0.8471
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Lus10034428 [exp]	7.4	0.8280
AT5G08460			GDSL-like Lipase/Acylhydrolase...		Lus10028685 [exp]	7.7	0.9020
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	8.8	0.8898
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	9.8	0.8878
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	11.0	0.9036
AT1G14550			Peroxidase superfamily protein...		Lus10009898 [exp]	14.7	0.8955

Compare expression of checked genes

Lus10007875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.