Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62860 500 / 8e-179 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 485 / 8e-173 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 352 / 4e-121 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 350 / 2e-120 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G55180 347 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 345 / 2e-118 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 300 / 1e-100 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 293 / 2e-97 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 257 / 5e-83 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 251 / 2e-81 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030366 [exp] 570 / 0 AT3G62860 400 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 353 / 2e-121 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 348 / 3e-115 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 286 / 1e-94 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 278 / 9e-91 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 274 / 1e-90 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 271 / 5e-89 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10034331 [exp] 256 / 1e-82 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 256 / 2e-82 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129000 [exp] 529 / 0 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 508 / 0 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 350 / 2e-120 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 342 / 4e-117 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 300 / 2e-99 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G046500 [exp] 250 / 5e-81 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 246 / 3e-78 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 200 / 2e-61 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.001G175000 [exp] 196 / 7e-60 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.010G222300 [exp] 196 / 8e-60 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10007877 pacid=23143207 polypeptide=Lus10007877 locus=Lus10007877.g ID=Lus10007877.BGIv1.0 annot-version=v1.0 ATGGGGGAGGTAGTGCAGGATTACATAAAGAATTCAAGGGGAGTTGAGCTGTTCACATGCAGATGGGTGCCGGTTTGTTCTTCGCCGAAAGCTCTGGTTT TCCTCTGCCATGGGTACGGGATGGAATGCAGTGGTTTCATGAGAGAAATTGGAATCAGGCTGGCGGGAGCAGGGTACGGAGTGTTCGGGATGGATTACGA AGGGCACGGGCGATCGAGCGGGTCGAGGTGCTACATTAAGAAGTTCGAGAACATCATCAACGACTGCGACGAGTTCTTCAGGTCACTGGCGGCAGAGAAA GAGCTGAGAGACAAAGGAAGGTTCCTTTACGGTGAATCCATGGGAGGCGCCGTCTCCTTGCTGTTGCACAAGAAACGCCCTTCCTTCTACAACGGCGCCG TTCTTGTTGCACCTATGTGTAAGATATCAGAGAAGTTGAAGCCACATCCGGTGGTGGTCAACATATTGACCGGTTTCGAAGAGCTCATCCCAAAGTGGAA GATCGTCCCAACTCGAGACGTCATCGATGCAGCCTTCAAAGACCCCGTCAAACGAGAAGAGATAAGGAACAACAAACTTATATACCAAGACAAGCCACGC CTGAAAACTGCACTAGAGATGCTCCGTACGAGCATGAAGCTAGAGGAGACTCTCCACCAAGTCACACTCCCATTCCTAGTCCTCCACGGAGACGCTGACA CGGTCACGGATCCCGAGATAAGCAAGGCGCTTTACGAGCAGGCAGGGAGCAAGGACAAGACCATCAAGCTCTACCCTGGAATGTGGCACGGGCTGACATC CGGTGAGACCGACGAAAATGTGCAGATTGTGTTCTCCGATGTCATTTCGTGGTTGGATAGACATAGTGGTGTGGCGAGTGGGATTGTTGTCGAACCGATC GGCGATGGTGATGATTATCGGATGGTGGTGGCGGCTGTAGCTAGTAGTGATGGTGGTGGTGTGGTAAGGAAGAAGGGGTTAAGTTGGACGAGATCAGGTG GTAATAAGCGGCAGACGGGGAAAACGACGTCGTATGGAAGTGGTGGGAGTTATCTTTGTGGGTTTAAGGAGCCTAGGACTCTGCATTCTGCTATGTAG
AA sequence Show only first row Show all	>Lus10007877 pacid=23143207 polypeptide=Lus10007877 locus=Lus10007877.g ID=Lus10007877.BGIv1.0 annot-version=v1.0 MGEVVQDYIKNSRGVELFTCRWVPVCSSPKALVFLCHGYGMECSGFMREIGIRLAGAGYGVFGMDYEGHGRSSGSRCYIKKFENIINDCDEFFRSLAAEK ELRDKGRFLYGESMGGAVSLLLHKKRPSFYNGAVLVAPMCKISEKLKPHPVVVNILTGFEELIPKWKIVPTRDVIDAAFKDPVKREEIRNNKLIYQDKPR LKTALEMLRTSMKLEETLHQVTLPFLVLHGDADTVTDPEISKALYEQAGSKDKTIKLYPGMWHGLTSGETDENVQIVFSDVISWLDRHSGVASGIVVEPI GDGDDYRMVVAAVASSDGGGVVRKKGLSWTRSGGNKRQTGKTTSYGSGGSYLCGFKEPRTLHSAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10007877 [exp]	0	1
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	1.7	0.8867
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	3.0	0.8653
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10021270 [exp]	3.5	0.8755
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	4.6	0.8383
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	10.7	0.8418
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	15.6	0.8507
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	16.1	0.8082
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	20.6	0.8370
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10024029 [exp]	21.7	0.8336
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	22.7	0.8459

Compare expression of checked genes

Lus10007877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.