Plant FIBer expression Database

Lus10007879 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47600 727 / 0 ATMHX1, ATMHX MAGNESIUM/PROTON EXCHANGER 1, magnesium/proton exchanger (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030365
[exp]
836 / 0 AT2G47600 677 / 0.0 MAGNESIUM/PROTON EXCHANGER 1, magnesium/proton exchanger (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G128600
[exp]
737 / 0 AT2G47600 777 / 0.0 MAGNESIUM/PROTON EXCHANGER 1, magnesium/proton exchanger (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01699 Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence
>Lus10007879 pacid=23143232 polypeptide=Lus10007879 locus=Lus10007879.g ID=Lus10007879.BGIv1.0 annot-version=v1.0
ATGAGCGTCTGGCTCAGGACTCTACTCTACTGCTTAGGGCTTGCTTATTGCTTCGTCGGATTATCGGCCATAACCGCTCGATTCTTCCGTTCCATGGAGA
ATGTCGTCAAGCATTCTCGTGAGGTCGTGGAGATTGATCCTTACACAAAAGCTGAAGTTGTCCGCCGTGAGAAAATTTGGAACTACGCCATTGCTGACAT
CTCCCTTCTCGCATTTGGCACCAGCTTCCCCCAGATTTCGCTCGCCACTATCGACGCCATCCGCAACATTGGCAACACTTATGCTGGAGGACTGGGTCCT
GGAACGCTTGTTGGTTCAGCTGCTTTCGATCTTTTCCCGATTCATGCTGTTTGTGTTGTGGTTCCGAAAGCTGGAGAGTTGAAGAAGATATCTGATCTTG
GAGTCTGGCTGGTGGAGCTCTTCTGGTCTTTCTGGGCTTATATATGGCTCTACATCATTTTGGAGGCAAGTAATGCTAATGATGTATGGACTCCAAATGT
TATAACTCTATGGGAAGCTTTGTTTACAGTACTTCAGTATGGGTTACTTCTTATACACGCTTATGCTCAGGACAAACGTTGGCCTTACTTATCACTACCC
ATGGCGAGAGGCGAGAGGCCGGAAGAATGGGTGCCGGAAGAGATCCCTCTGTGCAACAATCGAAAACCGGAGATAGTCGATGACCCCGAAGCAAGTGGGA
ACGTTGTTGATATCTTCTCGATTCATTCAAACAGTGGCATAGACTCAGATTATCAGAATTTGTCAGGATCTGTGGCGGAGTGCTCGAATAATCCCTGTGA
CGAGGAGGGAAATGAAAATCCGTGTGTACTCGCTATTTGGAAACAGCAGTTTGTTGACTCACTCAGGCTGGAAAAGCCGGAATCGAGAAAACTGGAGAGC
ATTTTCATGAGGGCGGCAAGAATCTCCTGGCAGTTACTCGTTGCACCATGGCGACTTGTGTTTGCTTTCGTACCGCCTTGCCAGATTGCTAATGGATGGG
TAGCCTTCATATGCTCTTTGATCTTTATCAGTGGGATAGCCTACATTGTCACCCGCATCACCGATCTCATAAGCTGTGTCACAGGAATAAACCCGTACGT
GATTGCACTGACGGCGTTGGCAAGTGGGACTTCGTGGCCGGATCTCGTAGCCAGTAAGATAGCAGCTGAACGTCAGTTGACTGCAGATTCCGCTATAGCG
AACATCACCTGCAGCAATTCCGTTAACATCTACGTGGGGATCGGATTTCCGTGGCTGATCGATACGACGTACAATTACTTCGCGTACAAGGAACCGTTGC
GGATAGAGAACGCCAAGGGACTAAGCTTCTCGTTGCTGATATTCTTCGCCACATCGGTTGGTTGCATTGGAGTTCTCGTCTTTAGGCGGTTGACTTTAGG
TGCAGAGCTCGGAGGGCCGAGGATTTGGGCATGGCTTACCTCTGGCTATCTAATGTTGCTTTGGGTTGTCTTTGTAGTTCTTTCTTCCCTCAGAATCTGT
GGCATCATCTGA
AA sequence
>Lus10007879 pacid=23143232 polypeptide=Lus10007879 locus=Lus10007879.g ID=Lus10007879.BGIv1.0 annot-version=v1.0
MSVWLRTLLYCLGLAYCFVGLSAITARFFRSMENVVKHSREVVEIDPYTKAEVVRREKIWNYAIADISLLAFGTSFPQISLATIDAIRNIGNTYAGGLGP
GTLVGSAAFDLFPIHAVCVVVPKAGELKKISDLGVWLVELFWSFWAYIWLYIILEASNANDVWTPNVITLWEALFTVLQYGLLLIHAYAQDKRWPYLSLP
MARGERPEEWVPEEIPLCNNRKPEIVDDPEASGNVVDIFSIHSNSGIDSDYQNLSGSVAECSNNPCDEEGNENPCVLAIWKQQFVDSLRLEKPESRKLES
IFMRAARISWQLLVAPWRLVFAFVPPCQIANGWVAFICSLIFISGIAYIVTRITDLISCVTGINPYVIALTALASGTSWPDLVASKIAAERQLTADSAIA
NITCSNSVNIYVGIGFPWLIDTTYNYFAYKEPLRIENAKGLSFSLLIFFATSVGCIGVLVFRRLTLGAELGGPRIWAWLTSGYLMLLWVVFVVLSSLRIC
GII

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G47600 ATMHX1, ATMHX MAGNESIUM/PROTON EXCHANGER 1, ... Lus10007879
[exp]
0 1
AT2G37730 Protein of unknown function (D... Lus10010869
[exp]
1.7 0.9328
AT1G28280 VQ motif-containing protein (.... Lus10041929
[exp]
3.2 0.9259
AT5G44670 Domain of unknown function (DU... Lus10038387
[exp]
5.5 0.9233
AT1G48480 RKL1 receptor-like kinase 1 (.1) Lus10031350
[exp]
5.9 0.9104
AT4G36870 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodom... Lus10022485
[exp]
6.5 0.9137
AT5G44670 Domain of unknown function (DU... Lus10036247
[exp]
6.6 0.9170
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10008529
[exp]
6.7 0.8831
AT1G71040 LPR2 Low Phosphate Root2, Cupredoxi... Lus10032443
[exp]
6.7 0.9051
AT1G29390 COR413IM2, COR3... COLD REGULATED 314 INNER MEMBR... Lus10015258
[exp]
7.1 0.8992
AT1G49230 RING/U-box superfamily protein... Lus10005818
[exp]
8.1 0.9156

Lus10007879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.