Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47590 432 / 5e-149 PHR2 photolyase/blue-light receptor 2 (.1) AT5G24850 184 / 3e-52 CRY3 cryptochrome 3 (.1) AT3G15620 57 / 1e-08 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT1G04400 50 / 2e-06 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G25290 46 / 6e-05 DNA photolyases;DNA photolyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020878 [exp] 177 / 1e-49 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 67 / 1e-11 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10022095 [exp] 62 / 5e-10 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10000521 [exp] 48 / 1e-05 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10031137 [exp] 47 / 4e-05 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10031716 [exp] 46 / 6e-05 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128500 [exp] 496 / 1e-173 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.002G204000 [exp] 490 / 2e-171 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.006G277500 [exp] 172 / 3e-47 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.003G060000 [exp] 71 / 6e-13 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.015G129500 [exp] 47 / 3e-05 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.010G071200 [exp] 45 / 7e-05 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.002G096900 [exp] 42 / 0.0007 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10007880 pacid=23143209 polypeptide=Lus10007880 locus=Lus10007880.g ID=Lus10007880.BGIv1.0 annot-version=v1.0 ATGGATCCCAATTCCCTGAATCTCCAAGATCCATCCCCTCCAGAAGAAAACGAACCCCAACAGCTCGCCACCCACCCCATCGCCCCCCACCCGCCCCCCC CGCCGCATTGCCATTCGCCGCCGCCTCCCTCTCAATTTCTCTCCCGACAATCTTCACCCCCGCCAGAATCTTCACTCTCTTCGCAGCCTCATCTCCCAGC AGGGTCAAAATCCCTACTCAGTCTCTCAATTTCTCAATCTCTTCATCATCACCTCCCATTCCGAGAGGCCTCTCCTTCAAGTCCACAATCGCCGCTAATC TACGCTCCGACACCCACGGCGAGCCCCCTCCACACCCCGCCCCCCCCCACCCCGCGCCGCCCATCGGAGCCTTCCAACTCCGCCGCCCTCCGCCGCGCCT CCGTCGTCTGGTTCCGCAACGACCTCCGAGTCCACGACAACGAGTGCCTCAACTCGGCACACAACGAGTCCCTCTCGATCCTCCCAGTCTACTGCTTCGA TCCTAGAGAGTACGGAAAATCCTCATCCGGATTCGACAAGACCGGTCCGAACCGGGCCAGCTTCGTGATCGAATCGGTTTCCGACCTCCGCAAGAACCTC AGGGACCGCGGGTCGGATCTGGTGGTTCGGGTTGGCCGACCCGAGGTTGTTTTGGTTGAATTGGCTAAGGCTGTGGGAGCTGATGCTGTCTATGCTCATA GAGAAGTGTCTCATGATGAAGTTAAGGCTGAGGAGAGGATTGAAAGTGCGATGAAGGAGGAAGGGATTGAAGTGAAGTTCTTTTGGGGGAGCACTCTGTA TCATGTGGATGATTTGCCGTTTAAGCTTGAGGATATGCCTTCCAATCATGGAGGGTTTAGGGAGAAAGTTCAAGGGTTAGATATTAGGAAGACCATTGCT GCTCTGGACCAGCTCAAGGGGACTCCATCTTCTGGAGATGTTGAGCCTGGGGAGATTCCTACATTGTTGGATTTGGGTCTCAGTAGCCCATCACCATCTC AGGACGGGAAGCCGGCCACAGTTGCTTCAATGGTAGGAGGGGAGACAGAAGCACTGCAAAGGCTTAAGAGATTTGCAGCCGAGAGCCAAGCGCAACCAGC TGCCAAGGGAACCAATGGCGGCCACGACAGCATATACGGTGCAAATTTTTCATGTAAAATCTCGCCCTGGTTAACCATGGGGTGCATCTCCCCCCGTTCC ATGTTTGACGAGCTCAAGAAAACTGGAAGCAGAATGATCCCTGCCTCGAGCAAAAAAGATGGCGGAAGCAGCTCGGGAGAAACTGGAATGAACTGGTTGA TGTTTGAGTTGCTGTGGAGGGATTTCTTCAGATTTATAACGAAGAAATACAGTGCTCCGAAGAAACAGCTTGATGCTTCAGCTCCTCCTGTCACTGCTTG TACTGGTACTACTGCTGCTTTTGCATAG
AA sequence Show only first row Show all	>Lus10007880 pacid=23143209 polypeptide=Lus10007880 locus=Lus10007880.g ID=Lus10007880.BGIv1.0 annot-version=v1.0 MDPNSLNLQDPSPPEENEPQQLATHPIAPHPPPPPHCHSPPPPSQFLSRQSSPPPESSLSSQPHLPAGSKSLLSLSISQSLHHHLPFREASPSSPQSPLI YAPTPTASPLHTPPPPTPRRPSEPSNSAALRRASVVWFRNDLRVHDNECLNSAHNESLSILPVYCFDPREYGKSSSGFDKTGPNRASFVIESVSDLRKNL RDRGSDLVVRVGRPEVVLVELAKAVGADAVYAHREVSHDEVKAEERIESAMKEEGIEVKFFWGSTLYHVDDLPFKLEDMPSNHGGFREKVQGLDIRKTIA ALDQLKGTPSSGDVEPGEIPTLLDLGLSSPSPSQDGKPATVASMVGGETEALQRLKRFAAESQAQPAAKGTNGGHDSIYGANFSCKISPWLTMGCISPRS MFDELKKTGSRMIPASSKKDGGSSSGETGMNWLMFELLWRDFFRFITKKYSAPKKQLDASAPPVTACTGTTAAFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	0	1
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	1.7	0.8820
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025245 [exp]	6.9	0.8685
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10015919 [exp]	7.3	0.8437
AT2G20690			lumazine-binding family protei...		Lus10021323 [exp]	9.5	0.8283
AT2G21180			unknown protein		Lus10007573 [exp]	11.1	0.8687
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	13.6	0.8500
AT2G36570			Leucine-rich repeat protein ki...		Lus10021131 [exp]	20.4	0.8390
AT1G28680			HXXXD-type acyl-transferase fa...		Lus10015303 [exp]	20.7	0.8665
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10014033 [exp]	23.3	0.8546
AT5G62140			unknown protein		Lus10015008 [exp]	24.5	0.8497

Compare expression of checked genes

Lus10007880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.