Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02400 560 / 0 U3 ribonucleoprotein (Utp) family protein (.1) AT5G08600 491 / 2e-161 U3 ribonucleoprotein (Utp) family protein (.1), U3 ribonucleoprotein (Utp) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030364 [exp] 1283 / 0 AT4G02400 683 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1) Lus10033797 [exp] 77 / 5e-17 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203700 [exp] 758 / 0 AT4G02400 627 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1) Potri.014G128300 [exp] 736 / 0 AT4G02400 634 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04615 [flax] [poplar] Utp14 Utp14 protein
Representative CDS sequence Show only first row Show all	>Lus10007881 pacid=23143218 polypeptide=Lus10007881 locus=Lus10007881.g ID=Lus10007881.BGIv1.0 annot-version=v1.0 ATGATGAAGGGATTCGATGTAGGGAAAGACTTTTATGAGTATGAGGAGGAGGTGCCTGAAGAGGAAGCTAAGAAGAATCGCCGTTTCGATAACATCAAGA ATTTCGAGTATGAGCTCCCCGAGGATTTTAAGGATGAGAATGTACCATCAGATGATGATGATGATGACAATCACACTGACTTTGAGGACGAAGACCACAG TGATGGAAGGAGCTTGAGAGATGTTGAGGATGAAGACGATAGAAAACATAAGAGGATGCTGAAAGAAATCACAAAGTTGCCAAGCGAAGCCTTTGAAGGT GGGAGGAAAAGGAATGAAGCTGTTATATCAGAGCCCTATCCAGAGTCTGAATACAATCCCAGTCGTGATGTTCTGGATGGCGGTGGAGGAGTTACTATTG AAGATCTTGTTGTAAGTCTTCATCAAAATTCATCATATATTAAACTCCGGAAAGAAATGCGTCATGTGGAGACCAAGCATGTACCCCTTTCAGCACCACT TCCGAAGGAAGCTAGAGACAAGGTGGAGAGGCAAATAGCATCTATAATATCAACGAAACAAATCTCAAAATGGGATCCCTTGATTAAAAGGAATAGGGAG GCCCCTTGTCTTATTTTCGACAAGGATACTGACCTGGGATTTTCAACAGTTGGATCAATAGGTCAAAACTTTGAACCTAGAACTGTGTTCGAGAAGCAAA TGGCTCCATTAGTTAATGACGATAGGGTTATTGATGCTCACAAAGAAGATGGTATCAAGCTTCTGGAACTAATCAAGATATCTTTGGAGGATTATAAAAA CTCTCGTGAACACATTGCCAAAATGCGAAGTCTTCTTTTCCGACATGAAATCAAGATGAAGCGCATAAAAAAGATAAAGTCAAAGGCCCACCGTCGAATG TTGAAGAGAGATAGAATTAAACTAGCATCTGTTGAAATGCAGATGGATCAAGAAGCAGGTAAAGAACTGGCAATGAAGCAAGAATTTGCGCGTGCCGAGG AACGAATGACGCTGAGGCACAAAAACAAGTCAAAATGGGCATTGCGGGTCATAAAGCGTGGTCTGAATGCTCAAGATGACGGTACTCGAGCAGCCATGGC AGAACAGCTCAGTCAGCATAATCTCTTAACAAGAAAAATGAATTCAATGAATGGCAGTAGCAACAGCGATGACAGCAGCGATGAGGAATACGATGAAAAT TCTGATGGTTCGGAACAGGATAGGGCATCTAAGTTGTTGAGAAAAGCAAAAGAAAAGACCCTTGGCCTTTTGGAGGAGGAAGATGAAGTGCCAAAATCAG GAGTTCTTTCTTTGCCTTTTATGGCACGGGGATTGAAAAAGCAGAATGATGCAGCAATTGAAGAAGCTAAACTAGCACTTCAAGAGTTTGAATCATCACT AAACCAAATGGAGGATGATGCCACGGGTATTGTAGAAACAGGCACTGTAACTGGTAAAAGGGTATTTGGAGGAGCCAAAGAGAAGAAGGTTGCTCTTCCA GCCAAGAAGAGAAAGTTGAACGACGACCAATCCTCTGATAGCAACAGTGACGCTGAAGACGAAGAGATTATTGTTGATGACAGAATCGATGATAGGCCGA AGAAAGTAAATGTTAGCTATTCTTTGCTTAATGAAGACGCTGAATTTCATCAGGAACCTCTCATTGTGGACTCGGAAAGCTTAACTGTGGCTCCAACCAC AAAGACAACAAATGAAGTTTCTATCTTTGCATCAAACTATTGGAGAAAAATGAACAAGGCCAATGAAGATGAATCCAGTTCGAAAAGTGCTTCAAAAACT TTTCAGCCTGCTCTTCAGAATGAACGTCCAGAGGAGATCAGCGACGACAGTGATAGTGACAATGGAGGACAGATGATCGACGGCCATAGAGCATCATCAT CATGTGAACTACCTTCACAAGCGGACCTTATCCATGAGGCGTTTGCTGGGGACGACGTGGAAGAGGAGTTTGCCAAAGACAAGGATGAGGCATTGAACGT CGAAAACCCTGAACCTGAAAAACCTGTTCTACTTCCTGGGTGGGGCCAATGGACTCATACACAGAAAAGGAAAGGCTTGCCCTCTTGGATGGAGGAAGAG CATAAACTGGCCAACAAGAAGAGAGATGAGGCTATCAAGAAAAGGAAAGATGCACGTCTCAAACACGTTATCATATCCGAGAAGATCGATAAAAAGGCTG AAAAATTACAGACAAAGACCTTGCCTTTCCCTTTCAAATGTAAGGAACTCTTTGAGCAAAGCATGCGGAATCCCATTGGACCGGAGTTCAACCCCGTATC GACTTTTGCACCTCTTGTTCGACCTGAAGTGGTGAAGACACCTGGAGTAATCATCGCGCCGATCAAGTATGAAGACGTCGATCCACACGACAAGCAAGGT CTTAAGCAGCAAAAGCATAAGCAAAACCCGTATGCGGTGAAGAATGGTGCTGCTAAGCGACAGAGGCTGAAGCCAGTGATTGTCAAGTCTTGA
AA sequence Show only first row Show all	>Lus10007881 pacid=23143218 polypeptide=Lus10007881 locus=Lus10007881.g ID=Lus10007881.BGIv1.0 annot-version=v1.0 MMKGFDVGKDFYEYEEEVPEEEAKKNRRFDNIKNFEYELPEDFKDENVPSDDDDDDNHTDFEDEDHSDGRSLRDVEDEDDRKHKRMLKEITKLPSEAFEG GRKRNEAVISEPYPESEYNPSRDVLDGGGGVTIEDLVVSLHQNSSYIKLRKEMRHVETKHVPLSAPLPKEARDKVERQIASIISTKQISKWDPLIKRNRE APCLIFDKDTDLGFSTVGSIGQNFEPRTVFEKQMAPLVNDDRVIDAHKEDGIKLLELIKISLEDYKNSREHIAKMRSLLFRHEIKMKRIKKIKSKAHRRM LKRDRIKLASVEMQMDQEAGKELAMKQEFARAEERMTLRHKNKSKWALRVIKRGLNAQDDGTRAAMAEQLSQHNLLTRKMNSMNGSSNSDDSSDEEYDEN SDGSEQDRASKLLRKAKEKTLGLLEEEDEVPKSGVLSLPFMARGLKKQNDAAIEEAKLALQEFESSLNQMEDDATGIVETGTVTGKRVFGGAKEKKVALP AKKRKLNDDQSSDSNSDAEDEEIIVDDRIDDRPKKVNVSYSLLNEDAEFHQEPLIVDSESLTVAPTTKTTNEVSIFASNYWRKMNKANEDESSSKSASKT FQPALQNERPEEISDDSDSDNGGQMIDGHRASSSCELPSQADLIHEAFAGDDVEEEFAKDKDEALNVENPEPEKPVLLPGWGQWTHTQKRKGLPSWMEEE HKLANKKRDEAIKKRKDARLKHVIISEKIDKKAEKLQTKTLPFPFKCKELFEQSMRNPIGPEFNPVSTFAPLVRPEVVKTPGVIIAPIKYEDVDPHDKQG LKQQKHKQNPYAVKNGAAKRQRLKPVIVKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10020905 [exp]	3.0	0.8484
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	3.2	0.8605
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	5.4	0.8696
AT5G48120			ARM repeat superfamily protein...		Lus10037557 [exp]	5.8	0.8228
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	6.2	0.8659
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	6.9	0.8655
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10034919 [exp]	7.7	0.8360
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	9.2	0.8509
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	9.5	0.8470
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	9.8	0.8497

Compare expression of checked genes

Lus10007881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.