Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02390 755 / 0 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) AT2G31320 324 / 4e-99 ATPARP2 poly(ADP-ribose) polymerase 2 (.1) AT5G22470 139 / 3e-34 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030363 [exp] 987 / 0 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10033871 [exp] 323 / 2e-98 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Lus10019539 [exp] 169 / 7e-45 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10043383 [exp] 159 / 9e-41 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10000104 [exp] 108 / 2e-28 AT4G02390 120 / 1e-33 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128200 [exp] 901 / 0 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.014G128000 [exp] 641 / 0 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.002G041300 [exp] 311 / 2e-94 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Potri.009G143900 [exp] 152 / 2e-38 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.009G136501 [exp] 84 / 1e-18 AT4G02390 74 / 5e-16 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.004G184100 [exp] 54 / 2e-07 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0084 [flax] [poplar] ADP-ribosyl PF00644 [flax] [poplar] PARP Poly(ADP-ribose) polymerase catalytic domain CL0084 [flax] [poplar] PF02877 [flax] [poplar] PARP_reg Poly(ADP-ribose) polymerase, regulatory domain CL0084 [flax] [poplar] PF05406 [flax] [poplar] WGR WGR domain CL0306 [flax] [poplar] HeH PF02037 [flax] [poplar] SAP SAP domain
Representative CDS sequence Show only first row Show all	>Lus10007882 pacid=23143181 polypeptide=Lus10007882 locus=Lus10007882.g ID=Lus10007882.BGIv1.0 annot-version=v1.0 ATGGCGAGCAACAAGCTCAAAGTAGACGAGCTCCGAGCCCAACTCCTCAAGCGCGGCCTCGATGCTTCCGGAACTAAGCCCTCCCTGGTGCGGAGATTAC AATCCGCTTTGGAGCAAGAGAACCAGCAATCCGTGGATGCAGCTGCTGCCGCCGACGGCGCCAGTCGTGGCAACGGTAAACGAGCAAGGGATACTGGAGA CGAGGAGGACGGCGGCAATGGTTCTGTTGACAAAATCCAAGCCCTCGAGAAGTTTCGAGGCATGAATGTGAAGCAATTGCGCGAAGAAACGAAGCTCCGT GGGGTTTCAGCTGCTGGAACGAAGAAGGAACTGCTCCAGAGGCTTTCTGGTGGTTTGGAAGACGGAAGGGATCCTGTGGATGCTCTTCAAGTTGAAAAAC AAGAAGAGATAGCTCAAGAGAAAATTGTAACCGCAACTAAGAAGGGGGCTGCCGTGCTGGATCAGTATCTTCCGGATCATATTAAGTCACAGTTCCATGT TCTCCAATCGGGTGATAATATATATGAGGCCATGTTGAATCAGACGAATGTTGGAAATAACAATAACAAGTTTTACGTCATTCAACTCCTAGAATCTGAT GATGGTGGTAGATACATGATATACAATAGATGGGGCAGGGTGGGAATTAAAGGACAAGATAAAGTATTTGGTCCCTACACTTCACGAGATTCTGCAATTC ACGAGTTTGAGCAAAAGTTTTATGCCAAGACAAAGAACAATTGGTCTGATCGCAGAGAGTTTGAATGCCATCCGAAGTGCTATACCTGGCTGGAAATGGA TTACGGAAATCAGGAAGAAGAAGCAAAAGTTATGCCTCCTGCTACAGGAAACCAGATTCAAGAAACACGACTTGATCCTCGTATCGCAAACTTTATCTCG TTGATCTGCAACATTAGCATGATGAGACAACAGATGATGGAAATAGGATACAATGCTGATAAGCTGCCGCTTGGCAAGCTAAGCAAGGCAACAATATCGA AGGGCTATGAAGTCTTAAAAAGAATTGCAGATGTAATTGGTACAGCTGATAGGTCAACGCTGGACCAATTAACCGGGGAGTTTTACACTGTTATTCCTCA TGATTTTGGATTCAAAAAAATGCGCGAGTTTGTTATTGATACTCCCCAGAAGTTGAAGCACAAGCTCGAGATGGTTGAAGCTCTGGGTGAAATCGAGGTT GCAACCAAGTTGTTGGAGGGTGAAACAGGAACGCAGGATGATCCCTTGTACAGTTGCTACAAGCGACTGCAATGTGAACTGATCCCCGTTGAACTTAATT CCGAGGAGTTCTCTATGATTGCTACATATATGCACAATACACATGCAAAAACGCATTCACAGTACCAGGTGGACATCAGTCAGATACTGAAGGTCTCACG AGAGAGTGATGAAGAGCGCTTCAGAAAGTTCTCCAGCGCAAAGAATAGAATGCTGTTGTGGCATGGTTCCCGGCTTACAAACTGGACTGGCATCCTATCT CAAGGCTTGCGTATTGCTCCTCCAGAAGCTCCTGTAACAGGGTATATGTTCGGTAAAGGTGTTTATTTTGCCGATATGTTCTCCAAAAGTGCAAATTATT GTTATGCCAGTCATCTTGCTTCATCCGGTGTTCTGCTTCTATGTGAGGTTGCACTGGGCGATATGGCTGAGCTTTCACAAGCCAAGTATGATGCTGATAA GTTGCCGCCTGGAAAGCTAAGCACAAAAGGTGTAGGTGAAACGGCTCCGGATCTCTCGGAAGCAAAGGCACTTGAAGATGGGGTAGTCGTCCCCTTAGGG AAGCCGAAACAGCAAGGGAGTAAGGTGATCGGAAGTAATTAG
AA sequence Show only first row Show all	>Lus10007882 pacid=23143181 polypeptide=Lus10007882 locus=Lus10007882.g ID=Lus10007882.BGIv1.0 annot-version=v1.0 MASNKLKVDELRAQLLKRGLDASGTKPSLVRRLQSALEQENQQSVDAAAAADGASRGNGKRARDTGDEEDGGNGSVDKIQALEKFRGMNVKQLREETKLR GVSAAGTKKELLQRLSGGLEDGRDPVDALQVEKQEEIAQEKIVTATKKGAAVLDQYLPDHIKSQFHVLQSGDNIYEAMLNQTNVGNNNNKFYVIQLLESD DGGRYMIYNRWGRVGIKGQDKVFGPYTSRDSAIHEFEQKFYAKTKNNWSDRREFECHPKCYTWLEMDYGNQEEEAKVMPPATGNQIQETRLDPRIANFIS LICNISMMRQQMMEIGYNADKLPLGKLSKATISKGYEVLKRIADVIGTADRSTLDQLTGEFYTVIPHDFGFKKMREFVIDTPQKLKHKLEMVEALGEIEV ATKLLEGETGTQDDPLYSCYKRLQCELIPVELNSEEFSMIATYMHNTHAKTHSQYQVDISQILKVSRESDEERFRKFSSAKNRMLLWHGSRLTNWTGILS QGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASHLASSGVLLLCEVALGDMAELSQAKYDADKLPPGKLSTKGVGETAPDLSEAKALEDGVVVPLG KPKQQGSKVIGSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	0	1
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10039205 [exp]	1.0	0.8860
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	3.7	0.8634
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10027633 [exp]	6.0	0.7816
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	7.5	0.8221
AT1G42430			unknown protein		Lus10021819 [exp]	13.7	0.7502
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10022796 [exp]	15.7	0.7872
AT1G48170			unknown protein		Lus10022781 [exp]	16.2	0.7318
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	16.7	0.7265
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	19.8	0.7354
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	20.0	0.7821

Compare expression of checked genes

Lus10007882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.