Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19760 513 / 0 Mitochondrial substrate carrier family protein (.1) AT4G24570 187 / 1e-55 DIC2 dicarboxylate carrier 2 (.1) AT2G22500 170 / 2e-49 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT5G09470 146 / 3e-40 DIC3 dicarboxylate carrier 3 (.1) AT3G54110 138 / 3e-37 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT1G14140 135 / 2e-36 Mitochondrial substrate carrier family protein (.1) AT5G58970 133 / 2e-35 ATUCP2 uncoupling protein 2 (.1.2) AT4G03115 103 / 2e-24 Mitochondrial substrate carrier family protein (.1) AT5G01340 99 / 5e-23 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT1G53680 96 / 1e-22 ATGSTU28 glutathione S-transferase TAU 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030361 [exp] 527 / 0 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1) Lus10030362 [exp] 173 / 2e-51 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) Lus10040709 [exp] 142 / 6e-39 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10027755 [exp] 141 / 2e-38 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 140 / 4e-38 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 140 / 6e-38 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 137 / 5e-37 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10030443 [exp] 130 / 2e-34 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10016445 [exp] 129 / 1e-33 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004500 [exp] 519 / 0 AT5G19760 519 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.003G220400 [exp] 518 / 0 AT5G19760 498 / 6e-180 Mitochondrial substrate carrier family protein (.1) Potri.002G104400 [exp] 197 / 1e-59 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 192 / 1e-57 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 190 / 8e-57 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 189 / 1e-56 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 187 / 9e-56 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.007G113000 [exp] 187 / 1e-55 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.017G045332 [exp] 178 / 3e-52 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.006G095500 [exp] 148 / 4e-41 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0172 [flax] [poplar] PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10007883 pacid=23143231 polypeptide=Lus10007883 locus=Lus10007883.g ID=Lus10007883.BGIv1.0 annot-version=v1.0 ATGGCTGCTAATTCGGGCGAGCTCATACTTGTTGGCTGGGTAGCGAGTCCGTTTTCAGCGGGAGTAAAGATTGCGCTGGCTGAAAAGGGCGTTACTGAGT ACGAGTCCAGGCACGAAGATGTGCACAACAAGAGCACTCTGCTTCGGGAAATGAACCCAGCCACCAACCAAATCCCTGTCTTGATCCACAACAACAAACC CATCTCTGATTCCCTTGTCATCGTCCAGTATATCGACGAGGTCTGGACTCGCAGTTCCCCTTTCTCTTTGCTTCCTTCTGACACGCCAGGTTCTGGGCCG ATTACACTAGCAAGTCACATTTCTCCAAACGAAGCTGAGCTCACAACTCCCTCTCTCTCATTTTCCTCTCTCGTCGATTCCAGCGAAGAAGAAGAGATGG GAGAGCAGAAGCAGGCTCAACCCCTTGGTGTCTGGAGCACCATTAAGCCTTTTGTTAATGGCGGCGCCTCTGGTATGGCTGCTACCTGCGTTATTCAGCC AATCGATATGATTAAGGTGAGGATCCAATTGGGTCAGGGATCAGCATCTCATGTCGCCAAGACCATGCTCAAGGAGGAAGGCGTTGCAGCCTTTTACAAG GGTCTGTCTGCTGGACTACTGAGGCAAGCCACCTACACAACTGCCCGGCTTGGGTCATTCCGGATTTTGACCAACAAGGCAATTGAGGCAAACGACGGGA AGCCTCTCCCTCTGTATCAAAAGGCTTTATGTGGTCTGACTGCTGGAGCTATTGGAGCATCTGTGGGAAGCCCTGCAGATTTAGCTCTCATCCGTATGCA GGCAGATGCCACCTTGCCTCCTGCTCAGCGCCGACACTATACCAATGCCTTCCATGCACTTGGCCGCATAGTGGCAGATGAAGGAGTTTTGGCTCTCTGG AAGGGTGCAGGCCCTACTGTTGTCAGAGCTATGGCTTTGAACATGGGAATGCTTGCTTCCTATGATCAAAGTCTTGAATTGTTCAGAGATAACCTTGGTT TTGGAGAATTGCCTACTGTCGTAGGTGCCAGTGCCATATCAGGGTTCTTTGCTGCAGCTTGCAGTCTTCCATTTGATTATGTGAAAACACAGATTCAGAA AATGCAACCTGATGCTGAGGGGAAGTATCCATACACTGGCTCCATGGATTGTGCTATGAAGACACTCAAGGCAGGTGGACCACTGAAGTTCTACACTGGA TTCCCCGTGTACTGTGTTCGAATTGCTCCCCATGTCATGATGACCTGGATATTCCTGAACCAGATCCAGAAGATGGAGAAGAAAATCGGATTATAG
AA sequence Show only first row Show all	>Lus10007883 pacid=23143231 polypeptide=Lus10007883 locus=Lus10007883.g ID=Lus10007883.BGIv1.0 annot-version=v1.0 MAANSGELILVGWVASPFSAGVKIALAEKGVTEYESRHEDVHNKSTLLREMNPATNQIPVLIHNNKPISDSLVIVQYIDEVWTRSSPFSLLPSDTPGSGP ITLASHISPNEAELTTPSLSFSSLVDSSEEEEMGEQKQAQPLGVWSTIKPFVNGGASGMAATCVIQPIDMIKVRIQLGQGSASHVAKTMLKEEGVAAFYK GLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPPAQRRHYTNAFHALGRIVADEGVLALW KGAGPTVVRAMALNMGMLASYDQSLELFRDNLGFGELPTVVGASAISGFFAAACSLPFDYVKTQIQKMQPDAEGKYPYTGSMDCAMKTLKAGGPLKFYTG FPVYCVRIAPHVMMTWIFLNQIQKMEKKIGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	0	1
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	1.4	0.9594
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	1.4	0.9447
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	3.5	0.9329
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10040660 [exp]	6.7	0.8763
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	8.4	0.9154
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	8.7	0.8990
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	9.8	0.9272
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	13.4	0.8931
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	13.6	0.8843
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	14.1	0.8971

Compare expression of checked genes

Lus10007883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.